Non-Coding RNA Search

Ss1.1-rcki23_p21.5

Sequence:


               
               TGGGGTGATGGGTGATGGAGCGCCCCCTCCTGTGCTGTGCAGGTTCCTGTTGGTTGGTCC
TTGGCGGCAGCTGCCAGGAGCTAGAGTTACCTCATGGGAAACATTTCACAGGTCTTGTTA
GGGTGGATGTTCTGGGTTGAACATGGTCTGATGCTGGAAGTTTTGATGAGTGAGATTTTC
CTATCATTCCTGCACACCCTTAGGATTTAACTGGTTCAGACTTAAATGCCTGCATGGTGC
CTTTTAGGGTAAGGTGTCACCATGTATTTTTAGTGAAAATAAGTGTTTCTAGGTTAGGAA
AGTTAAATTCCAATTATCCGTAAGAGAGGAGGAGGGTCAGCTAAGAGGTGGAAGGGCGCT
AGCTTTTTGGTTCTGATTTTCAAACTGGTGAAGTGTTTTCAGATGACTCAGTCATGGTGC
CTCTCGATTTGGGAGCCTGCTTATGTTCTTGTCCTGGAAGCATGAAAAGAAGTCCTCAAA
TGAATAAGAAGTGTGTGAGCTCCCATGAATACTAGTTCTTGCATCTTTTATTTGGTAACT
TAGATTAAATTGTGTTGCTTTTCTATCACAAATGGTTTCCTTATAAAACTGGTTACAACA
CGTGAATTGATGTGTAAAGACCTGCCTTCGAAAGCAGAGAGGTCTTGGGAGCACCACCTG
CTGCCTGACCCTCCTCTGAGAAGTTGGTAATAGAAGCAGCTCAAGAAGCTTGGCGTTCAC
CATGTTTCATGAATATTAGTAAATATAAGGCTAAGGGCTTGTAATGTATAGGAGTAGAGC
CTCTGATCGACCAAAAGGCATCTGGGTTTCAATTCATTTTTCTCTGCCAGACCTCTTGTC
TGAATATGGACACTTTTTTTCTGGTCAGCGGCTGAGGCTGCAAATGACGGGGCTTTTGGC
CTGTGCGCTGCTGTTGTGGGCCCCTCTGTCCCTGCCACCGAGAGCCAGATGCCTAGGAAC
CAGCAAAAACACAGCTCTTGGGGGCAAAGTAATTTTTTCTAATCTGCTGTTGCTTGAGAG
GGCCCAAATGTTATGGTCAGTTTCTTCACTGTAACTTCTGGAGAAAGTTCACTTCGAGGC
CCCTGCATTGAGATCACCTCGGTCTAAGTTTAGAGGGAAATTGGACAAAAACCTTCGTTT
AGGGAACTGATGATGGTGGTCTCACGGGTGGTACCAAGAAACAGAGTTCCTTGTATTAAG
TGCACTTCATGTATTTCTAATAAGAGGACTTTCCAGATAGCGACATTTGTTATGTTCTGG
CTTTTAAAAGGTGAAATACAAATAAATTTCATAATTTATCCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGTGATGGGTGATGGAGCGCCCCCTCCTGTGCTGTGCAGGTTCCTGTTGGTTGGTCC
TTGGCGGCAGCTGCCAGGAGCTAGAGTTACCTCATGGGAAACATTTCACAGGTCTTGTTA
GGGTGGATGTTCTGGGTTGAACATGGTCTGATGCTGGAAGTTTTGATGAGTGAGATTTTC
CTATCATTCCTGCACACCCTTAGGATTTAACTGGTTCAGACTTAAATGCCTGCATGGTGC
CTTTTAGGGTAAGGTGTCACCATGTATTTTTAGTGAAAATAAGTGTTTCTAGGTTAGGAA
AGTTAAATTCCAATTATCCGTAAGAGAGGAGGAGGGTCAGCTAAGAGGTGGAAGGGCGCT
AGCTTTTTGGTTCTGATTTTCAAACTGGTGAAGTGTTTTCAGATGACTCAGTCATGGTGC
CTCTCGATTTGGGAGCCTGCTTATGTTCTTGTCCTGGAAGCATGAAAAGAAGTCCTCAAA
TGAATAAGAAGTGTGTGAGCTCCCATGAATACTAGTTCTTGCATCTTTTATTTGGTAACT
TAGATTAAATTGTGTTGCTTTTCTATCACAAATGGTTTCCTTATAAAACTGGTTACAACA
CGTGAATTGATGTGTAAAGACCTGCCTTCGAAAGCAGAGAGGTCTTGGGAGCACCACCTG
CTGCCTGACCCTCCTCTGAGAAGTTGGTAATAGAAGCAGCTCAAGAAGCTTGGCGTTCAC
CATGTTTCATGAATATTAGTAAATATAAGGCTAAGGGCTTGTAATGTATAGGAGTAGAGC
CTCTGATCGACCAAAAGGCATCTGGGTTTCAATTCATTTTTCTCTGCCAGACCTCTTGTC
TGAATATGGACACTTTTTTTCTGGTCAGCGGCTGAGGCTGCAAATGACGGGGCTTTTGGC
CTGTGCGCTGCTGTTGTGGGCCCCTCTGTCCCTGCCACCGAGAGCCAGATGCCTAGGAAC
CAGCAAAAACACAGCTCTTGGGGGCAAAGTAATTTTTTCTAATCTGCTGTTGCTTGAGAG
GGCCCAAATGTTATGGTCAGTTTCTTCACTGTAACTTCTGGAGAAAGTTCACTTCGAGGC
CCCTGCATTGAGATCACCTCGGTCTAAGTTTAGAGGGAAATTGGACAAAAACCTTCGTTT
AGGGAACTGATGATGGTGGTCTCACGGGTGGTACCAAGAAACAGAGTTCCTTGTATTAAG
TGCACTTCATGTATTTCTAATAAGAGGACTTTCCAGATAGCGACATTTGTTATGTTCTGG
CTTTTAAAAGGTGAAATACAAATAAATTTCATAATTTATCCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               771-928, + strand, RNAz p=0.982507

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               771-928, + strand, RNAz p=0.982507

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               9-683, gnl|bosTau2|chr13 (59260903-59261573)
               

               
               9-683, gnl|Hg17|chr20 (48002544-48003175)
               


               
               697-1303, gnl|bosTau2|chr13 (59261654-59262237)
               

               
               697-1303, gnl|Hg17|chr20 (48003254-48003829)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-683, gnl|bosTau2|chr13 (59260903-59261573)
               

               
               9-683, gnl|Hg17|chr20 (48002544-48003175)
               


               
               697-1303, gnl|bosTau2|chr13 (59261654-59262237)
               

               
               697-1303, gnl|Hg17|chr20 (48003254-48003829)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               duo (0.518403)
               

               
               cje (0.495704)
               

               
               spl (0.429553)
               

               
               tes (0.415628)
               

               
               elu (0.385356)
               

               
               eye (0.341006)
               

               
               cut (0.339847)
               

               
               lnt (0.284616)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.518403)
               

               
               cje (0.495704)
               

               
               spl (0.429553)
               

               
               tes (0.415628)
               

               
               elu (0.385356)
               

               
               eye (0.341006)
               

               
               cut (0.339847)
               

               
               lnt (0.284616)
               

               
               bla (0.248694)
               

               
               pgl (0.236967)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	9-683, gnl\|bosTau2\|chr13 (59260903-59261573)
	9-683, gnl\|Hg17\|chr20 (48002544-48003175)

	697-1303, gnl\|bosTau2\|chr13 (59261654-59262237)
	697-1303, gnl\|Hg17\|chr20 (48003254-48003829)

	duo (0.518403)
	cje (0.495704)
	spl (0.429553)
	tes (0.415628)
	elu (0.385356)
	eye (0.341006)
	cut (0.339847)
	lnt (0.284616)
	bla (0.248694)
	pgl (0.236967)
	cty (0.20816)
	col (0.195008)
	sag (0.182715)
	gul (0.177588)
	sin (0.174948)
	fhi (0.169578)
	cki (0.165235)
	mga (0.160205)
	tbr (0.154178)
	cag (0.151194)
	fat (0.147427)
	pty (0.142714)
	nca (0.136874)
	che (0.136314)
	ssp (0.13552)
	ste (0.135208)
	nmm (0.132802)
	thg (0.126791)
	jca (0.11396)
	spc (0.113366)