Non-Coding RNA Search

Ss1.1-rcki24_m24.5

Sequence:


               
               GATAGATGGAGGGCCTCCATCCCTGGAGCCGTTGGAGCGCTGTTTGCGTGGCCTCGAGTT
TTCAGTTCCTTGCACGTGATTTGCCCTCTGGAGACGATGACGGGGACAGATGGGACTGGA
GAGAGGAGTTTGGTGGCCTTGGAGGAGCCAAAGCCTGAGAGGCCTCTGCTCGGGGCAGGT
TCCTGCCCCGTCCTCCCGGTCCATCTCCCCCACTCCCCCCACCCCGTGACACGGCCCCGC
TCACCTCCTCAGGGACGTCCAGATCGGCGACATTGTCACAGTGGGCGAGTGTCGGCCCCT
GAGCAAGACGGTGCGCTTCAATGTGCTCAAGGTCACCAAGGCTGCTGGCACCAAGAAGCA
GTTCCAGAAGTTCTGAGACTGCACCCCATCCACTGCCCTGAACAAAATAAAGCTATTTTC
CCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATAGATGGAGGGCCTCCATCCCTGGAGCCGTTGGAGCGCTGTTTGCGTGGCCTCGAGTT
TTCAGTTCCTTGCACGTGATTTGCCCTCTGGAGACGATGACGGGGACAGATGGGACTGGA
GAGAGGAGTTTGGTGGCCTTGGAGGAGCCAAAGCCTGAGAGGCCTCTGCTCGGGGCAGGT
TCCTGCCCCGTCCTCCCGGTCCATCTCCCCCACTCCCCCCACCCCGTGACACGGCCCCGC
TCACCTCCTCAGGGACGTCCAGATCGGCGACATTGTCACAGTGGGCGAGTGTCGGCCCCT
GAGCAAGACGGTGCGCTTCAATGTGCTCAAGGTCACCAAGGCTGCTGGCACCAAGAAGCA
GTTCCAGAAGTTCTGAGACTGCACCCCATCCACTGCCCTGAACAAAATAAAGCTATTTTC
CCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5TXS9_ANOGA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5TXS9_ANOGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               291-409, + strand, RNAz p=0.506898

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               291-409, + strand, RNAz p=0.506898

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               251-456, gnl|bosTau2|chr16 (34814263-34814064)
               

               
               251-456, gnl|Hg17|chr1 (237126046-237125841)
               

               
               251-456, gnl|Mm7|chr7 (84286488-84286297)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               251-456, gnl|bosTau2|chr16 (34814263-34814064)
               

               
               251-456, gnl|Hg17|chr1 (237126046-237125841)
               

               
               251-456, gnl|Mm7|chr7 (84286488-84286297)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               col (0.195008)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               cov (0.132153)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               cov (0.132153)

	251-456, gnl\|bosTau2\|chr16 (34814263-34814064)
	251-456, gnl\|Hg17\|chr1 (237126046-237125841)
	251-456, gnl\|Mm7\|chr7 (84286488-84286297)

	col (0.195008)
	cki (0.165235)
	cag (0.151194)
	pty (0.142714)
	cov (0.132153)