Non-Coding RNA Search

Ss1.1-rcki27_l5.5

Sequence:


               
               TCAGCTTTCAGCACCTCCAGAACCTTTCCTGCTTAAAGTTGTGGCACAATAACATCGCTT
ATATTCCTGCCCAGATTGGGGCATTAGCGAATCTAGAGCAGCTCTCCCTGGACCATAATA
ACATTGAGAACTTGCCCCTGCAGCTTTTCCTGTGCACCAAACTGCACTATCTGGATCTAA
GCTATAACCACCTGACCTTCATCCCGGAAGAAATCCAGTATCTGAGCAATTTGCAGTACT
TTGCTGTGACCAACAACAACATTGAGATGCTACCAGATGGGCTGTTTCAGTGCAAAAAGC
TGCAGTGTTTACTTTTGGGGAAAAATAGCCTGATGAGTCTGTCCCCTCACGTGGGCGAGC
TGTCGAACCTGACTCATCTGGAGCTCGTTGGCAATTACCTGGAAACACTGCCCCCTGAAC
TGGAAGGGTGTCAGTCCCTAAAACGGAGCTGTCTCATTGTCGAGGAGAATTTGCTCAACA
CGCTTCCTCCCCCCGTCACAGAACGTTTGCAGACGGGTTTAGATAAATGCTGACCTCAAG
AGAAAACAATTGTTCCCAGTACAGGGCTCTCGATGAGAACCGACTCTTCCCAAGTGACAA
AGCTGAACCGTGGGTGATGACTAAATCTAACCAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGCTTTCAGCACCTCCAGAACCTTTCCTGCTTAAAGTTGTGGCACAATAACATCGCTT
ATATTCCTGCCCAGATTGGGGCATTAGCGAATCTAGAGCAGCTCTCCCTGGACCATAATA
ACATTGAGAACTTGCCCCTGCAGCTTTTCCTGTGCACCAAACTGCACTATCTGGATCTAA
GCTATAACCACCTGACCTTCATCCCGGAAGAAATCCAGTATCTGAGCAATTTGCAGTACT
TTGCTGTGACCAACAACAACATTGAGATGCTACCAGATGGGCTGTTTCAGTGCAAAAAGC
TGCAGTGTTTACTTTTGGGGAAAAATAGCCTGATGAGTCTGTCCCCTCACGTGGGCGAGC
TGTCGAACCTGACTCATCTGGAGCTCGTTGGCAATTACCTGGAAACACTGCCCCCTGAAC
TGGAAGGGTGTCAGTCCCTAAAACGGAGCTGTCTCATTGTCGAGGAGAATTTGCTCAACA
CGCTTCCTCCCCCCGTCACAGAACGTTTGCAGACGGGTTTAGATAAATGCTGACCTCAAG
AGAAAACAATTGTTCCCAGTACAGGGCTCTCGATGAGAACCGACTCTTCCCAAGTGACAA
AGCTGAACCGTGGGTGATGACTAAATCTAACCAAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9NW37_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NW37_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-260, gnl|bosTau2|chr3 (40541580-40541837)
               

               
               3-260, gnl|Hg17|chr1 (89762112-89762369)
               

               
               3-260, gnl|Mm7|chr5 (104658685-104658942)
               


               
               261-636, gnl|bosTau2|chr3 (40549170-40549553)
               

               
               261-636, gnl|Hg17|chr1 (89770351-89771060)
               

               
               261-636, gnl|Mm7|chr5 (104662817-104663206)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-260, gnl|bosTau2|chr3 (40541580-40541837)
               

               
               3-260, gnl|Hg17|chr1 (89762112-89762369)
               

               
               3-260, gnl|Mm7|chr5 (104658685-104658942)
               


               
               261-636, gnl|bosTau2|chr3 (40549170-40549553)
               

               
               261-636, gnl|Hg17|chr1 (89770351-89771060)
               

               
               261-636, gnl|Mm7|chr5 (104662817-104663206)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cki (0.165235)
               

               
               cst (0.140036)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               cst (0.140036)

	3-260, gnl\|bosTau2\|chr3 (40541580-40541837)
	3-260, gnl\|Hg17\|chr1 (89762112-89762369)
	3-260, gnl\|Mm7\|chr5 (104658685-104658942)

	261-636, gnl\|bosTau2\|chr3 (40549170-40549553)
	261-636, gnl\|Hg17\|chr1 (89770351-89771060)
	261-636, gnl\|Mm7\|chr5 (104662817-104663206)