Ss1.1-rcki29_f1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCTCCTTATGATCATTCTCAGCCCTTGGTGGGACATTCTACAGAGGCCCTTGCTGCTC CTCCACCCGTGCCGGTGGTGCCACATGTGGCAGCCCCTGTGGAAGTTTCCAGTTCACAGT ATGTGGCCCAAAGTGATGGTGTGGTACACCAAGACTCCAGTGTCAACGTCTTGCCGGTGC CAGCCCCAGGCCCAGTCCAGGGACAGAATTATGGTGTTTGGGATTCAAACCAACAGTCCG TCAGTGTACAGCAGCAGTATTCTCCTGCACAATCTCAAGCAACCATATATTATCAAGGAC AGACTTGTCCAGCTGTCTATGGTGTGACATCACCTTATTCACAGACAACTCCACCAATTG TACAGAGTTATGCCCAGCCAAGTCTTCAGTACATCCAGGGACAACAGATTTTCACAGCCC ACCCACAAGGAGTGGTGGTACAGCCAACTGCGGCCGTGACTACAATAGTTGCACCAGGGC AGCCTCAGCCCTTACAGCCACCTGAAATGGTTGTGACAAATAATCTCCTGGATCTACCAC CCCCATCTCCTCCCAAACCAAAAACCATCATCTTACCTCCCAACTGGAAGACTGCCCGAG ACCCAGAAGGGAAGATTTACTACTACCATGTGATCACAAGGCAGACTCAGTGGGATCCTC CTACTTGGGAAAGCCCAGGAGATGATGCCAGCCTTGAGCATGAAGCTGAGATGGACTTAG GAACCCCAACAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCTCCTTATGATCATTCTCAGCCCTTGGTGGGACATTCTACAGAGGCCCTTGCTGCTC CTCCACCCGTGCCGGTGGTGCCACATGTGGCAGCCCCTGTGGAAGTTTCCAGTTCACAGT ATGTGGCCCAAAGTGATGGTGTGGTACACCAAGACTCCAGTGTCAACGTCTTGCCGGTGC CAGCCCCAGGCCCAGTCCAGGGACAGAATTATGGTGTTTGGGATTCAAACCAACAGTCCG TCAGTGTACAGCAGCAGTATTCTCCTGCACAATCTCAAGCAACCATATATTATCAAGGAC AGACTTGTCCAGCTGTCTATGGTGTGACATCACCTTATTCACAGACAACTCCACCAATTG TACAGAGTTATGCCCAGCCAAGTCTTCAGTACATCCAGGGACAACAGATTTTCACAGCCC ACCCACAAGGAGTGGTGGTACAGCCAACTGCGGCCGTGACTACAATAGTTGCACCAGGGC AGCCTCAGCCCTTACAGCCACCTGAAATGGTTGTGACAAATAATCTCCTGGATCTACCAC CCCCATCTCCTCCCAAACCAAAAACCATCATCTTACCTCCCAACTGGAAGACTGCCCGAG ACCCAGAAGGGAAGATTTACTACTACCATGTGATCACAAGGCAGACTCAGTGGGATCCTC CTACTTGGGAAAGCCCAGGAGATGATGCCAGCCTTGAGCATGAAGCTGAGATGGACTTAG GAACCCCAACAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 200-365, - strand, RNAz p=0.990413 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 200-365, - strand, RNAz p=0.990413 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-365, gnl|bosTau2|chr22 (41090745-41090381) | |
| 1-365, gnl|canFam2|chr20 (44768655-44768133) | |
| 1-365, gnl|danRer3|chr16 (9171431-9170874) | |
| 1-365, gnl|echTel1|scaffold_315675 (7252-6627) | |
| 1-365, gnl|fr1|chrUn (65646862-65646307) | |
| 1-365, gnl|galGal2|chr2 (3394102-3394627) | |
| 1-365, gnl|hg17|chr3 (47073313-47073835) | |
| 1-365, gnl|Hg17|chr3 (47073679-47073315) | |
| 1-365, gnl|loxAfr1|scaffold_3205 (65973-65448) | |
| 1-365, gnl|mm7|chr9 (110292466-110291944) | |
| 1-365, gnl|Mm7|chr9 (110292098-110292462) | |
| 1-365, gnl|monDom2|scaffold_5 (81469397-81469919) | |
| 1-365, gnl|oryCun1|scaffold_209070 (5452-5974) | |
| 1-365, gnl|panTro1|chr2 (48531353-48531875) | |
| 1-365, gnl|rheMac2|chr2 (89486797-89486275) | |
| 1-365, gnl|rn3|chr8 (114995601-114995079) | |
| 1-365, gnl|tetNig1|chr8 (6881064-6881604) | |
| 1-365, gnl|xenTro1|scaffold_298 (192582-193125) | |
| 501-641, gnl|bosTau2|chr22 (41087886-41087746) | |
| 501-641, gnl|canFam2|chr20 (44777750-44777610) | |
| 501-641, gnl|danRer3|chr16 (9179547-9179425) | |
| 501-641, gnl|dasNov1|scaffold_4418 (16366-16500) | |
| 501-641, gnl|fr1|chrUn (65647685-65647564) | |
| 501-641, gnl|galGal2|chr2 (3392433-3392559) | |
| 501-641, gnl|hg17|chr3 (47059034-47059175) | |
| 501-641, gnl|Hg17|chr3 (47059194-47059054) | |
| 501-641, gnl|loxAfr1|scaffold_3205 (74529-74388) | |
| 501-641, gnl|mm7|chr9 (110299985-110299846) | |
| 501-641, gnl|Mm7|chr9 (110299825-110299965) | |
| 501-641, gnl|monDom2|scaffold_5 (81455035-81455171) | |
| 501-641, gnl|oryCun1|scaffold_179327 (1628-1487) | |
| 501-641, gnl|panTro1|chr2 (48517247-48517388) | |
| 501-641, gnl|rheMac2|chr2 (89502861-89502720) | |
| 501-641, gnl|rn3|chr8 (115002713-115002574) | |
| 501-641, gnl|tetNig1|chr8 (6880252-6880373) | |
| 501-641, gnl|xenTro1|scaffold_298 (191857-191997) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-365, gnl|bosTau2|chr22 (41090745-41090381) | |
| 1-365, gnl|canFam2|chr20 (44768655-44768133) | |
| 1-365, gnl|danRer3|chr16 (9171431-9170874) | |
| 1-365, gnl|echTel1|scaffold_315675 (7252-6627) | |
| 1-365, gnl|fr1|chrUn (65646862-65646307) | |
| 1-365, gnl|galGal2|chr2 (3394102-3394627) | |
| 1-365, gnl|hg17|chr3 (47073313-47073835) | |
| 1-365, gnl|Hg17|chr3 (47073679-47073315) | |
| 1-365, gnl|loxAfr1|scaffold_3205 (65973-65448) | |
| 1-365, gnl|mm7|chr9 (110292466-110291944) | |
| 1-365, gnl|Mm7|chr9 (110292098-110292462) | |
| 1-365, gnl|monDom2|scaffold_5 (81469397-81469919) | |
| 1-365, gnl|oryCun1|scaffold_209070 (5452-5974) | |
| 1-365, gnl|panTro1|chr2 (48531353-48531875) | |
| 1-365, gnl|rheMac2|chr2 (89486797-89486275) | |
| 1-365, gnl|rn3|chr8 (114995601-114995079) | |
| 1-365, gnl|tetNig1|chr8 (6881064-6881604) | |
| 1-365, gnl|xenTro1|scaffold_298 (192582-193125) | |
| 501-641, gnl|bosTau2|chr22 (41087886-41087746) | |
| 501-641, gnl|canFam2|chr20 (44777750-44777610) | |
| 501-641, gnl|danRer3|chr16 (9179547-9179425) | |
| 501-641, gnl|dasNov1|scaffold_4418 (16366-16500) | |
| 501-641, gnl|fr1|chrUn (65647685-65647564) | |
| 501-641, gnl|galGal2|chr2 (3392433-3392559) | |
| 501-641, gnl|hg17|chr3 (47059034-47059175) | |
| 501-641, gnl|Hg17|chr3 (47059194-47059054) | |
| 501-641, gnl|loxAfr1|scaffold_3205 (74529-74388) | |
| 501-641, gnl|mm7|chr9 (110299985-110299846) | |
| 501-641, gnl|Mm7|chr9 (110299825-110299965) | |
| 501-641, gnl|monDom2|scaffold_5 (81455035-81455171) | |
| 501-641, gnl|oryCun1|scaffold_179327 (1628-1487) | |
| 501-641, gnl|panTro1|chr2 (48517247-48517388) | |
| 501-641, gnl|rheMac2|chr2 (89502861-89502720) | |
| 501-641, gnl|rn3|chr8 (115002713-115002574) | |
| 501-641, gnl|tetNig1|chr8 (6880252-6880373) | |
| 501-641, gnl|xenTro1|scaffold_298 (191857-191997) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.170503) | |
| cki (0.165235) | |
| nmm (0.132802) |