Ss1.1-rcki29_j23.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GCCGCGGCCACGGCTGTCAGAGCAGGAGAGGGGCCGGGCGGAGCGGCCATGGAGGGTCAG CGCTGGCTGCCGCTGGAGGCCAATCCCGAGGTCACCAACCAGTTTCTCAAACAACTAGGT CTGCATCCTAACTGGCAATTTGTTGATGTATATGGAATGGATCCTGAACTCCTTAGCATG GTACCAAGACCAGTGTGTGCAGTGTTGCTTCTCTTCCCTATTACAGAAAAGTATGAAGTA TTCAGAACAGAAGAAGAGGAAAAAATAAAATCTCAGGGACAAGATGTTACACCGTCAGTA TATTTCATGAAGCAAACCATCAGCAATGCCTGTGGAACAATTGGGCTAATCCATGCTATT GCCAACAATAAAAACAAGATGCACTTTGAATCTGGATCAACCTTGAAAAAATTCCTAGAG GAGTCTGCATCAATGAGCCCTGAGGAACGAGCCAGATACCTGGAAAGCTATGATGCCATT CGCGTTACTCACGAGACCAGTGCCCATGAAGGTCAGACTGAGGCACCAAATATAGATGAA AAAGTAGATCTTCATTTTATTGCATTAGTTCACGTAGATGGGCATCTCTATGAATTAGAT GGACGGAAACCATTTCCAATTAACCATGGGGAAACTAGTGATGAAACTTTATTAGAGGAT GCCATAGAAGTTTGCAAGAAGTTTATGGAACGTGACCCTGATGAACTGAGATTCAATGCA ATTGCTCTTTCTGCAGCATAGTTTGTCCATAATGGAAACACCAAATATTGTATTATTTGC AGCAAAATTAAATTTCTCCTGCCATACACTAACTCAAAAATTTTGATATTTTCATTAACT TGACTGATTAAACTTTATGTGAACTAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GCCGCGGCCACGGCTGTCAGAGCAGGAGAGGGGCCGGGCGGAGCGGCCATGGAGGGTCAG CGCTGGCTGCCGCTGGAGGCCAATCCCGAGGTCACCAACCAGTTTCTCAAACAACTAGGT CTGCATCCTAACTGGCAATTTGTTGATGTATATGGAATGGATCCTGAACTCCTTAGCATG GTACCAAGACCAGTGTGTGCAGTGTTGCTTCTCTTCCCTATTACAGAAAAGTATGAAGTA TTCAGAACAGAAGAAGAGGAAAAAATAAAATCTCAGGGACAAGATGTTACACCGTCAGTA TATTTCATGAAGCAAACCATCAGCAATGCCTGTGGAACAATTGGGCTAATCCATGCTATT GCCAACAATAAAAACAAGATGCACTTTGAATCTGGATCAACCTTGAAAAAATTCCTAGAG GAGTCTGCATCAATGAGCCCTGAGGAACGAGCCAGATACCTGGAAAGCTATGATGCCATT CGCGTTACTCACGAGACCAGTGCCCATGAAGGTCAGACTGAGGCACCAAATATAGATGAA AAAGTAGATCTTCATTTTATTGCATTAGTTCACGTAGATGGGCATCTCTATGAATTAGAT GGACGGAAACCATTTCCAATTAACCATGGGGAAACTAGTGATGAAACTTTATTAGAGGAT GCCATAGAAGTTTGCAAGAAGTTTATGGAACGTGACCCTGATGAACTGAGATTCAATGCA ATTGCTCTTTCTGCAGCATAGTTTGTCCATAATGGAAACACCAAATATTGTATTATTTGC AGCAAAATTAAATTTCTCCTGCCATACACTAACTCAAAAATTTTGATATTTTCATTAACT TGACTGATTAAACTTTATGTGAACTAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 38 entry(ies) | More info |
Aligned organism(s): 38 entry(ies) | Help | Less info |
227-388, gnl|bosTau2|chr12 (26910214-26910053) | |
227-388, gnl|canFam2|chr22 (32309291-32309478) | |
227-388, gnl|danRer3|chr15 (41593112-41593292) | |
227-388, gnl|dasNov1|scaffold_4565 (32132-32320) | |
227-388, gnl|echTel1|scaffold_276324 (4776-4971) | |
227-388, gnl|fr1|chrUn (155140414-155140603) | |
227-388, gnl|galGal2|chr1 (151735171-151734966) | |
227-388, gnl|hg17|chr13 (75038818-75039007) | |
227-388, gnl|Hg17|chr13 (75038827-75038988) | |
227-388, gnl|loxAfr1|scaffold_740 (105995-105807) | |
227-388, gnl|mm7|chr14 (96081867-96082055) | |
227-388, gnl|Mm7|chr14 (96081875-96082036) | |
227-388, gnl|monDom2|scaffold_8 (12505248-12505449) | |
227-388, gnl|oryCun1|scaffold_106081 (7757-7569) | |
227-388, gnl|panTro1|chr14 (57618636-57618824) | |
227-388, gnl|rheMac2|chr17 (56016641-56016833) | |
227-388, gnl|rn3|chr15 (85656865-85657053) | |
227-388, gnl|tetNig1|chr2 (8106838-8107027) | |
227-388, gnl|xenTro1|scaffold_107 (284562-284369) | |
521-632, gnl|bosTau2|chr18 (21673044-21673150) | |
521-632, gnl|Hg17|chr13 (75067045-75067156) | |
521-632, gnl|Mm7|chr14 (96105938-96106044) | |
656-868, gnl|bosTau2|chr18 (21678785-21678997) | |
656-868, gnl|canFam2|chr22 (32344445-32344610) | |
656-868, gnl|danRer3|chr15 (41595808-41595957) | |
656-868, gnl|dasNov1|scaffold_4565 (65518-65684) | |
656-868, gnl|echTel1|scaffold_276324 (43033-43200) | |
656-868, gnl|hg17|chr13 (75077850-75078012) | |
656-868, gnl|Hg17|chr13 (75077864-75078070) | |
656-868, gnl|loxAfr1|scaffold_740 (73966-73803) | |
656-868, gnl|mm7|chr14 (96111260-96111418) | |
656-868, gnl|Mm7|chr14 (96111268-96111476) | |
656-868, gnl|monDom2|scaffold_8 (12561130-12561299) | |
656-868, gnl|oryCun1|scaffold_208517 (119599-119438) | |
656-868, gnl|panTro1|chr14 (57657655-57657817) | |
656-868, gnl|rheMac2|chr17 (56057697-56057859) | |
656-868, gnl|rn3|chr15 (85685958-85686123) | |
656-868, gnl|tetNig1|chr2 (8108145-8108310) |
Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
227-388, gnl|bosTau2|chr12 (26910214-26910053) | |
227-388, gnl|canFam2|chr22 (32309291-32309478) | |
227-388, gnl|danRer3|chr15 (41593112-41593292) | |
227-388, gnl|dasNov1|scaffold_4565 (32132-32320) | |
227-388, gnl|echTel1|scaffold_276324 (4776-4971) | |
227-388, gnl|fr1|chrUn (155140414-155140603) | |
227-388, gnl|galGal2|chr1 (151735171-151734966) | |
227-388, gnl|hg17|chr13 (75038818-75039007) | |
227-388, gnl|Hg17|chr13 (75038827-75038988) | |
227-388, gnl|loxAfr1|scaffold_740 (105995-105807) | |
227-388, gnl|mm7|chr14 (96081867-96082055) | |
227-388, gnl|Mm7|chr14 (96081875-96082036) | |
227-388, gnl|monDom2|scaffold_8 (12505248-12505449) | |
227-388, gnl|oryCun1|scaffold_106081 (7757-7569) | |
227-388, gnl|panTro1|chr14 (57618636-57618824) | |
227-388, gnl|rheMac2|chr17 (56016641-56016833) | |
227-388, gnl|rn3|chr15 (85656865-85657053) | |
227-388, gnl|tetNig1|chr2 (8106838-8107027) | |
227-388, gnl|xenTro1|scaffold_107 (284562-284369) | |
521-632, gnl|bosTau2|chr18 (21673044-21673150) | |
521-632, gnl|Hg17|chr13 (75067045-75067156) | |
521-632, gnl|Mm7|chr14 (96105938-96106044) | |
656-868, gnl|bosTau2|chr18 (21678785-21678997) | |
656-868, gnl|canFam2|chr22 (32344445-32344610) | |
656-868, gnl|danRer3|chr15 (41595808-41595957) | |
656-868, gnl|dasNov1|scaffold_4565 (65518-65684) | |
656-868, gnl|echTel1|scaffold_276324 (43033-43200) | |
656-868, gnl|hg17|chr13 (75077850-75078012) | |
656-868, gnl|Hg17|chr13 (75077864-75078070) | |
656-868, gnl|loxAfr1|scaffold_740 (73966-73803) | |
656-868, gnl|mm7|chr14 (96111260-96111418) | |
656-868, gnl|Mm7|chr14 (96111268-96111476) | |
656-868, gnl|monDom2|scaffold_8 (12561130-12561299) | |
656-868, gnl|oryCun1|scaffold_208517 (119599-119438) | |
656-868, gnl|panTro1|chr14 (57657655-57657817) | |
656-868, gnl|rheMac2|chr17 (56057697-56057859) | |
656-868, gnl|rn3|chr15 (85685958-85686123) | |
656-868, gnl|tetNig1|chr2 (8108145-8108310) |
Expressed library(ies): 34 entry(ies) | More info |
Expressed library(ies): 34 entry(ies) | Help | Less info |
tes (1.4547) | |
cte (1.17096) | |
isp (0.902256) | |
lyg (0.798616) | |
cmu (0.55918) | |
sin (0.524843) | |
sug (0.509165) | |
tbr (0.462535) | |
ssp (0.406559) | |
sto (0.359648) | |
mga (0.32041) | |
ski (0.29347) | |
spl (0.286369) | |
ret (0.257467) | |
thg (0.253582) | |
pgl (0.236967) | |
mgp (0.230681) | |
spc (0.226732) | |
nms (0.213858) | |
nep (0.183925) | |
sag (0.182715) | |
mgm (0.180343) | |
nje (0.16592) | |
cje (0.165235) | |
cki (0.165235) | |
fco (0.157208) | |
lun (0.150489) | |
bfe (0.149858) | |
lin (0.145603) | |
pty (0.142714) | |
cst (0.140036) | |
che (0.136314) | |
ese (0.126502) | |
eru (0.120048) |
Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
tes (1.4547) | |
cte (1.17096) | |
isp (0.902256) | |
lyg (0.798616) | |
cmu (0.55918) | |
sin (0.524843) | |
sug (0.509165) | |
tbr (0.462535) | |
ssp (0.406559) | |
sto (0.359648) | |
mga (0.32041) | |
ski (0.29347) | |
spl (0.286369) | |
ret (0.257467) | |
thg (0.253582) | |
pgl (0.236967) | |
mgp (0.230681) | |
spc (0.226732) | |
nms (0.213858) | |
nep (0.183925) | |
sag (0.182715) | |
mgm (0.180343) | |
nje (0.16592) | |
cje (0.165235) | |
cki (0.165235) | |
fco (0.157208) | |
lun (0.150489) | |
bfe (0.149858) | |
lin (0.145603) | |
pty (0.142714) | |
cst (0.140036) | |
che (0.136314) | |
ese (0.126502) | |
eru (0.120048) |