Non-Coding RNA Search

Ss1.1-rcki30_g1.5

Sequence:


               
               AGTGACAACAGTGAGACATTCGTTGCCAACAATACCAGCACCCACAGTGCCCTGCACAGT
TTAGTGTCCAGCCTGAAACAGGAAATGACCAAACAGAAGATCGAGTACGAGTCCAGGATA
AAGAGCTTAGAACAGCGAAACTTGACTCTGGAAACAGAGATGATGAGCCTCCACGATGAA
CTGGATCAAGAAAGGAAGAAGTTCACGATGATAGAAATCAAGATGCGAAATGCCGAGCGA
GCAAAGGAAGATGCGGAGAAAAGAAACGACATGCTTCAGAAAGAAATGGAGCAGTTTTTT
TCCACGTTTGGGGAGCTGACAGTGGAACCCAGGAGAACAGAGAGAGGAAACACGATATGG
ATCCAGTGAGCCCACTTTCTCCTAAGGTCTTCAGTGGATCTGGGAAAACTCTGGGGGTTC
TGGTGGGAATATTATAGGGGAGCAGGTGGCTGGTCACCTGGCTGTACAGAGTTCTAACTG
AGGAAGGCATATCATTTACAGACATGTTTCATTCAAATCTCATTCAAATCAAATACAATG
TGTACCAAAGTCGTATCATGCCCCATAATGCTACTGTCAAGTGTTACAACTGGATATGTG
TATATAGAGTAGTTTTTAAAAAAGTAAACTAAAAATGAGAAGCATATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGACAACAGTGAGACATTCGTTGCCAACAATACCAGCACCCACAGTGCCCTGCACAGT
TTAGTGTCCAGCCTGAAACAGGAAATGACCAAACAGAAGATCGAGTACGAGTCCAGGATA
AAGAGCTTAGAACAGCGAAACTTGACTCTGGAAACAGAGATGATGAGCCTCCACGATGAA
CTGGATCAAGAAAGGAAGAAGTTCACGATGATAGAAATCAAGATGCGAAATGCCGAGCGA
GCAAAGGAAGATGCGGAGAAAAGAAACGACATGCTTCAGAAAGAAATGGAGCAGTTTTTT
TCCACGTTTGGGGAGCTGACAGTGGAACCCAGGAGAACAGAGAGAGGAAACACGATATGG
ATCCAGTGAGCCCACTTTCTCCTAAGGTCTTCAGTGGATCTGGGAAAACTCTGGGGGTTC
TGGTGGGAATATTATAGGGGAGCAGGTGGCTGGTCACCTGGCTGTACAGAGTTCTAACTG
AGGAAGGCATATCATTTACAGACATGTTTCATTCAAATCTCATTCAAATCAAATACAATG
TGTACCAAAGTCGTATCATGCCCCATAATGCTACTGTCAAGTGTTACAACTGGATATGTG
TATATAGAGTAGTTTTTAAAAAAGTAAACTAAAAATGAGAAGCATATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               203-362, + strand, RNAz p=0.732453

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               203-362, + strand, RNAz p=0.732453

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               124-648, gnl|bosTau2|chr6 (56568097-56567586)
               

               
               124-648, gnl|Hg17|chr4 (87278809-87279318)
               

               
               124-648, gnl|Mm7|chr5 (102085445-102085957)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               124-648, gnl|bosTau2|chr6 (56568097-56567586)
               

               
               124-648, gnl|Hg17|chr4 (87278809-87279318)
               

               
               124-648, gnl|Mm7|chr5 (102085445-102085957)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               sag (0.182715)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

	124-648, gnl\|bosTau2\|chr6 (56568097-56567586)
	124-648, gnl\|Hg17\|chr4 (87278809-87279318)
	124-648, gnl\|Mm7\|chr5 (102085445-102085957)

	sag (0.182715)
	rec (0.17307)
	fhi (0.169578)
	cki (0.165235)
	kid (0.129735)
	sug (0.127291)
	thg (0.126791)