Non-Coding RNA Search

Ss1.1-rcki31_k5.5

Sequence:


               
               TTTGAAAACAGCACTAAATAAACTTTGGGGGAAGTGGGGGTGGGGGGAGGGAAGGGCCCG
GACTCGGGGCTGTTCAACCTAATGGAAAACCCTGTTGCTGCGTCACTGTGTTCCCTTTGG
CTGGCCGAGGTTGGTACTGTGGGGGATTCAGGTTAGGCGCTGGCCCTGAGGACATCCCAG
CGGTGGTACTTTGGAGAAGCCTGTCTGCATCTGACTGAGCAGAACAGATCATCAGGTGCC
TGGAGCAAAACGAAAATTTTAAAAAGGACAATTAGTTTTAAGAGAAGGGAAAAAAAAAAG
GAAAGAAGAAAGGATTTTTGCGGAATTTCTCAAAAATCTCTTTTGTGGATTCCAGTAGTA
TTTATGTTGAGAGAAATTTTAGTCCATCCAGCTGTGCTAAAACTTGGATATTTGTGGAAA
ACTCACCACCATGCAAATATCAGAAGAGCGCTCTTGTTAGCACTTACTGTTTGCAAGAAC
AGAACACGTCCTGTTAGCCTTTTATGAAGAATGACAAGCGGAGGTGAAAGGGGAAGGAGG
TTATTTGATCTAGAAGATGAGTATTCTGATGTGGTGGCTTTTGGGGGAAAAAAATCTTTA
TTGGTCTTGACAACTGGAAAAAGTAATTCATCCAGAATTCATACTGTCTTGACAAGAACT
GTGGTTCTCTGTTTTTAGATATTGTGGAAAATGTTTTTTGGCATTTTTCCCTGATTTTAT
TTCTTCTCCCCCTCCCTTTTCTAAAAAACAAAAAACAAAAAACACACGCAAAACCAAAAC
GGAGCCAAAAGAAGAGAAAGAAAAGGAAATTTTATTATTCATGCTGTGTGAAAAAACTCC
CAGCCCCGATTGCTCAGCTGTTCGTACCTGACCTGCCGCCTGCATAGGAGCCAGTCCTGT
TCCTTCCAATTCGCCCCTCTTCCTACAGGGGAGAACTTCCAAATGTTAATTTTTTTTTTC
TTTTTGAAAATATAAATAATTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGAAAACAGCACTAAATAAACTTTGGGGGAAGTGGGGGTGGGGGGAGGGAAGGGCCCG
GACTCGGGGCTGTTCAACCTAATGGAAAACCCTGTTGCTGCGTCACTGTGTTCCCTTTGG
CTGGCCGAGGTTGGTACTGTGGGGGATTCAGGTTAGGCGCTGGCCCTGAGGACATCCCAG
CGGTGGTACTTTGGAGAAGCCTGTCTGCATCTGACTGAGCAGAACAGATCATCAGGTGCC
TGGAGCAAAACGAAAATTTTAAAAAGGACAATTAGTTTTAAGAGAAGGGAAAAAAAAAAG
GAAAGAAGAAAGGATTTTTGCGGAATTTCTCAAAAATCTCTTTTGTGGATTCCAGTAGTA
TTTATGTTGAGAGAAATTTTAGTCCATCCAGCTGTGCTAAAACTTGGATATTTGTGGAAA
ACTCACCACCATGCAAATATCAGAAGAGCGCTCTTGTTAGCACTTACTGTTTGCAAGAAC
AGAACACGTCCTGTTAGCCTTTTATGAAGAATGACAAGCGGAGGTGAAAGGGGAAGGAGG
TTATTTGATCTAGAAGATGAGTATTCTGATGTGGTGGCTTTTGGGGGAAAAAAATCTTTA
TTGGTCTTGACAACTGGAAAAAGTAATTCATCCAGAATTCATACTGTCTTGACAAGAACT
GTGGTTCTCTGTTTTTAGATATTGTGGAAAATGTTTTTTGGCATTTTTCCCTGATTTTAT
TTCTTCTCCCCCTCCCTTTTCTAAAAAACAAAAAACAAAAAACACACGCAAAACCAAAAC
GGAGCCAAAAGAAGAGAAAGAAAAGGAAATTTTATTATTCATGCTGTGTGAAAAAACTCC
CAGCCCCGATTGCTCAGCTGTTCGTACCTGACCTGCCGCCTGCATAGGAGCCAGTCCTGT
TCCTTCCAATTCGCCCCTCTTCCTACAGGGGAGAACTTCCAAATGTTAATTTTTTTTTTC
TTTTTGAAAATATAAATAATTACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               581-733, + strand, RNAz p=0.864995

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               581-733, + strand, RNAz p=0.864995

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001007226, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001007226, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-984, gnl|bosTau2|chr19 (29785865-29786841)
               

               
               1-984, gnl|Hg17|chr17 (45032599-45031653)
               

               
               1-984, gnl|Mm7|chr11 (95601017-95602045)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-984, gnl|bosTau2|chr19 (29785865-29786841)
               

               
               1-984, gnl|Hg17|chr17 (45032599-45031653)
               

               
               1-984, gnl|Mm7|chr11 (95601017-95602045)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               sme (0.610874)
               

               
               pro (0.512033)
               

               
               isp (0.300752)
               

               
               pty (0.285429)
               

               
               lyg (0.266205)
               

               
               nmm (0.265604)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.610874)
               

               
               pro (0.512033)
               

               
               isp (0.300752)
               

               
               pty (0.285429)
               

               
               lyg (0.266205)
               

               
               nmm (0.265604)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	1-984, gnl\|bosTau2\|chr19 (29785865-29786841)
	1-984, gnl\|Hg17\|chr17 (45032599-45031653)
	1-984, gnl\|Mm7\|chr11 (95601017-95602045)

	sme (0.610874)
	pro (0.512033)
	isp (0.300752)
	pty (0.285429)
	lyg (0.266205)
	nmm (0.265604)
	med (0.232504)
	ece (0.229305)
	gul (0.177588)
	fbs (0.175346)
	sin (0.174948)
	cut (0.169924)
	nje (0.16592)
	cki (0.165235)
	lun (0.150489)
	che (0.136314)
	ese (0.126502)
	bla (0.124347)
	cly (0.120642)
	eru (0.120048)
	pgl (0.118483)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)
	jej (0.0989218)
	ldo (0.0970026)