Ss1.1-rcki32_a24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAGAGTGACAGGAGCTACAAGGTAAAATCTCGCAACAGTACCGTGGAATACACCCTCA ATAAGCTGGAACCTGGGGGGAAATACCATGTCATTGTCCAGCTGGGGAACATGAGCAAAG ATTCCAGCATCAAAATTACCACAGTTTCTTTATCAGCACCTGATGCCTTAAAAATCATAA CAGAAAATGACCACGTCCTTCTGTTTTGGAAAAGCCTAGCTTTGAAGGAAAAGCATTTTA ATGAAAGCAGGGGCTACGAGATACACATGTTTGACAGCGCCATGAACATCACAGCGTACC TTGGGAATACTACTGACAATTTCTTTAAAATTTCCAACCTGAAGCTGGGTCATAATTACA CTTTCACCGTCCAAGCCCAGTGCCTTTTTGGCAGCCAGATTTGTGGGGAGCCTGCTGTCC TGCTGTATGATGAGTTGGGGTCTGGTAGGGATGTGTCAGCCATCCAGGCCACCAGATCTA CTGATGTTGCTGCCGTGGTGGTACCCATCTTGTTCCTGATACTGCTGAGCCTGGGCATCG GGTTTGCCATCCTCTACACAAAGCATCGGAGGCTACAGAACAGCTTCACGGCTTTTGCCA ACAGCCACTACAGCTCCAGGCTGGGCTCAGCCATCTTCTCCTCGGGGGATGACCTGGGGG AGGATGATGAAGATGCTCCGATGATAACTGGATTTTCAGACGACGTCCCCATGGTGATAG CCTGAAAGAGCTTTCCTCACTAGAAACCAAATGGTGTAAATATTTTATTTGATAAAGATA GTTGATGGTTTATTTTAAAAGATGCACTTTGAGTTGCAATATGTTATTTTTATACGGGCC AAAAATGAGACAAAACAAAACAAAAAAAAAAGAAGGAAAGGAAACTTTGTCATAATCAAC TGTGAACTTCAAACCAGGTTGATTTTAGTAACCAAACTGCTTTGATTTGATATTCATGTA GTCTTACAGGGCTATGCTTACTGGGCATGCTTTTACGTCTGTGAGATAACTTTGATTCAA TGAGTTGGCCATTCTTTTTATTTTTCTAAGACACAGAGTATTTAATAAAAACTTCAAGAG AAGAGTGATGGATGACATCCCTCCTCCTTGAAAGTATGCTCAGATTAAAAATTTTGTTTG CATTTAGTTTATATGAAAGTGTTCGGGTGTGTGCTGGGGGGAGGGTTCTTTTATGCTGTT TTGTTAATTTATTGGAACTCTGTGCAGGGCAAGGCTTTAGTGGTCATCGGACACCACATG TCAGGAGCCCCTCGCCTGTAGGGTCCAGGGGTGGAGAACAGAAGCAGTTTTGTTACCATG CCGGAAACAATCCATTTTTATTGACTCGTGTGTCACACGATGGCGTTTGGCAGGAGAGCA TATTGAGTCATTGCTCCATTTCATTTCAACAGAGCTGCAACTTGGGAAGCCCTGCAAGCA ACAGCTTCCTCTCTTAGACTCACCGACGGATTCTTACTGTACCTGCCTCTGTGCAAGACG TGGCTTTCAAAGCTACAAAGTGATAACACTGCTTTATTATACACTGGTGTCATTGTCATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAGAGTGACAGGAGCTACAAGGTAAAATCTCGCAACAGTACCGTGGAATACACCCTCA ATAAGCTGGAACCTGGGGGGAAATACCATGTCATTGTCCAGCTGGGGAACATGAGCAAAG ATTCCAGCATCAAAATTACCACAGTTTCTTTATCAGCACCTGATGCCTTAAAAATCATAA CAGAAAATGACCACGTCCTTCTGTTTTGGAAAAGCCTAGCTTTGAAGGAAAAGCATTTTA ATGAAAGCAGGGGCTACGAGATACACATGTTTGACAGCGCCATGAACATCACAGCGTACC TTGGGAATACTACTGACAATTTCTTTAAAATTTCCAACCTGAAGCTGGGTCATAATTACA CTTTCACCGTCCAAGCCCAGTGCCTTTTTGGCAGCCAGATTTGTGGGGAGCCTGCTGTCC TGCTGTATGATGAGTTGGGGTCTGGTAGGGATGTGTCAGCCATCCAGGCCACCAGATCTA CTGATGTTGCTGCCGTGGTGGTACCCATCTTGTTCCTGATACTGCTGAGCCTGGGCATCG GGTTTGCCATCCTCTACACAAAGCATCGGAGGCTACAGAACAGCTTCACGGCTTTTGCCA ACAGCCACTACAGCTCCAGGCTGGGCTCAGCCATCTTCTCCTCGGGGGATGACCTGGGGG AGGATGATGAAGATGCTCCGATGATAACTGGATTTTCAGACGACGTCCCCATGGTGATAG CCTGAAAGAGCTTTCCTCACTAGAAACCAAATGGTGTAAATATTTTATTTGATAAAGATA GTTGATGGTTTATTTTAAAAGATGCACTTTGAGTTGCAATATGTTATTTTTATACGGGCC AAAAATGAGACAAAACAAAACAAAAAAAAAAGAAGGAAAGGAAACTTTGTCATAATCAAC TGTGAACTTCAAACCAGGTTGATTTTAGTAACCAAACTGCTTTGATTTGATATTCATGTA GTCTTACAGGGCTATGCTTACTGGGCATGCTTTTACGTCTGTGAGATAACTTTGATTCAA TGAGTTGGCCATTCTTTTTATTTTTCTAAGACACAGAGTATTTAATAAAAACTTCAAGAG AAGAGTGATGGATGACATCCCTCCTCCTTGAAAGTATGCTCAGATTAAAAATTTTGTTTG CATTTAGTTTATATGAAAGTGTTCGGGTGTGTGCTGGGGGGAGGGTTCTTTTATGCTGTT TTGTTAATTTATTGGAACTCTGTGCAGGGCAAGGCTTTAGTGGTCATCGGACACCACATG TCAGGAGCCCCTCGCCTGTAGGGTCCAGGGGTGGAGAACAGAAGCAGTTTTGTTACCATG CCGGAAACAATCCATTTTTATTGACTCGTGTGTCACACGATGGCGTTTGGCAGGAGAGCA TATTGAGTCATTGCTCCATTTCATTTCAACAGAGCTGCAACTTGGGAAGCCCTGCAAGCA ACAGCTTCCTCTCTTAGACTCACCGACGGATTCTTACTGTACCTGCCTCTGTGCAAGACG TGGCTTTCAAAGCTACAAAGTGATAACACTGCTTTATTATACACTGGTGTCATTGTCATT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 3-142, gnl|bosTau2|chr15 (18468027-18468166) | |
| 3-142, gnl|canFam2|chr5 (15510705-15510501) | |
| 3-142, gnl|danRer3|chr15 (24609914-24610114) | |
| 3-142, gnl|dasNov1|scaffold_8702 (4580-4378) | |
| 3-142, gnl|echTel1|scaffold_312208 (3892-3688) | |
| 3-142, gnl|fr1|chrUn (125060171-125059974) | |
| 3-142, gnl|galGal2|chr24 (3409247-3409036) | |
| 3-142, gnl|hg17|chr11 (120996959-120997181) | |
| 3-142, gnl|Hg17|chr11 (120997016-120997155) | |
| 3-142, gnl|mm7|chr9 (41912009-41911802) | |
| 3-142, gnl|Mm7|chr9 (41911947-41911808) | |
| 3-142, gnl|monDom2|scaffold_2 (115569988-115569776) | |
| 3-142, gnl|oryCun1|scaffold_204650 (26149-26368) | |
| 3-142, gnl|panTro1|chr9 (123044016-123044238) | |
| 3-142, gnl|rheMac2|chr14 (120046717-120046939) | |
| 3-142, gnl|rn3|chr8 (44978083-44977877) | |
| 3-142, gnl|tetNig1|chr16 (8231336-8231550) | |
| 3-142, gnl|xenTro1|scaffold_999 (127466-127274) | |
| 251-447, gnl|bosTau2|chr15 (18472887-18473083) | |
| 251-447, gnl|Hg17|chr11 (121001003-121001199) | |
| 251-447, gnl|Mm7|chr9 (41908500-41908304) | |
| 657-1560, gnl|bosTau2|chr15 (18477432-18478340) | |
| 657-1560, gnl|Hg17|chr11 (121005414-121006322) | |
| 657-1560, gnl|Mm7|chr9 (41903041-41902166) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-142, gnl|bosTau2|chr15 (18468027-18468166) | |
| 3-142, gnl|canFam2|chr5 (15510705-15510501) | |
| 3-142, gnl|danRer3|chr15 (24609914-24610114) | |
| 3-142, gnl|dasNov1|scaffold_8702 (4580-4378) | |
| 3-142, gnl|echTel1|scaffold_312208 (3892-3688) | |
| 3-142, gnl|fr1|chrUn (125060171-125059974) | |
| 3-142, gnl|galGal2|chr24 (3409247-3409036) | |
| 3-142, gnl|hg17|chr11 (120996959-120997181) | |
| 3-142, gnl|Hg17|chr11 (120997016-120997155) | |
| 3-142, gnl|mm7|chr9 (41912009-41911802) | |
| 3-142, gnl|Mm7|chr9 (41911947-41911808) | |
| 3-142, gnl|monDom2|scaffold_2 (115569988-115569776) | |
| 3-142, gnl|oryCun1|scaffold_204650 (26149-26368) | |
| 3-142, gnl|panTro1|chr9 (123044016-123044238) | |
| 3-142, gnl|rheMac2|chr14 (120046717-120046939) | |
| 3-142, gnl|rn3|chr8 (44978083-44977877) | |
| 3-142, gnl|tetNig1|chr16 (8231336-8231550) | |
| 3-142, gnl|xenTro1|scaffold_999 (127466-127274) | |
| 251-447, gnl|bosTau2|chr15 (18472887-18473083) | |
| 251-447, gnl|Hg17|chr11 (121001003-121001199) | |
| 251-447, gnl|Mm7|chr9 (41908500-41908304) | |
| 657-1560, gnl|bosTau2|chr15 (18477432-18478340) | |
| 657-1560, gnl|Hg17|chr11 (121005414-121006322) | |
| 657-1560, gnl|Mm7|chr9 (41903041-41902166) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| fce (0.271592) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| fty (0.17584) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cje (0.165235) | |
| cki (0.165235) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| spc (0.113366) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| fty (0.17584) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cje (0.165235) | |
| cki (0.165235) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| spc (0.113366) |