Non-Coding RNA Search

Ss1.1-rcki33_l22.5

Sequence:


               
               AAGGTGGCTCCGATTCCTCCCTTTCTGAGGATCGGCCAGCTCGGTCCGGCCGCTCCTTCC
TGTTCCGAGTGCTCCGTGCGGCTCTTCCCCTTCAGCTCCTCCTGCTGCTCCTCATCGGGC
TCGCCTGCCTCGTGCCAATGTCGGAGGAAGACTACAGTTGTGCCCTCTCCAACAACTTTG
CCCGCTCCTTCCACCCCATGCTCAGATATACAAACGGCCCTCCTCCGCTCTGAACCCAGC
AGACGCCGCCTGCAGCACTGCTGGCTGCAGGAGGAGGATTTGGCCAAGGGTAACCCCAAA
CTAGCAGAAAGAGGACCTGAGTCCTGGCGGATGCCCTTGGTGTGGCAGCTTTAGCTCACC
TCTGAATCCCAGGTGCGCACCTCATAGCTTCGGAGGTGATGATTAAATGACGACAGGAGG
ACAGCAAGTAGAAACAGAAGGTCTGGAAGAGATTTTATTTGCAACCAAGCCTCGGCACTA
AAGAGACTAAGGACCTCCACAGTTCCCTGGCCGCGTGAACTCCGGGCCTTTGGCCCATTC
CCTGCACACCCGGGGACTTCAGCAGACCCTGCGGGCAGCCTCCCGTGGTGCTGCTGCATC
CACTCAATGATGACGCTACCTGAGCACCTTGTCAGCATCGAACAATCTACCAGCCCACCA
GTGCTGAAGAGGCTTTAGAGACCTGTGACCGACAGTTTTTAAGAGCTTATATGGCAGCTT
CCTTTCTACCTTGTTTTCCTTTTGGGCATGATGTTCTAACCTTGCAATAGAAGCACAAGC
TGTAAATCTAAAAAGCACTTTTTTAAAAAGATATAAAGAAAAATTGGATGTAATAAATAA
GATTGTGGAAGGCTTTATGTGAAAAAAAAAGTTGAATGTTATAGTAAAAGAAAAAGATAT
TTATGTATGTACAGTTTGCTAAAGCCAAGTTTTGTTTGTATCGATTTCTTTGCATTTATT
ATAGATACTATGAAATAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGTGGCTCCGATTCCTCCCTTTCTGAGGATCGGCCAGCTCGGTCCGGCCGCTCCTTCC
TGTTCCGAGTGCTCCGTGCGGCTCTTCCCCTTCAGCTCCTCCTGCTGCTCCTCATCGGGC
TCGCCTGCCTCGTGCCAATGTCGGAGGAAGACTACAGTTGTGCCCTCTCCAACAACTTTG
CCCGCTCCTTCCACCCCATGCTCAGATATACAAACGGCCCTCCTCCGCTCTGAACCCAGC
AGACGCCGCCTGCAGCACTGCTGGCTGCAGGAGGAGGATTTGGCCAAGGGTAACCCCAAA
CTAGCAGAAAGAGGACCTGAGTCCTGGCGGATGCCCTTGGTGTGGCAGCTTTAGCTCACC
TCTGAATCCCAGGTGCGCACCTCATAGCTTCGGAGGTGATGATTAAATGACGACAGGAGG
ACAGCAAGTAGAAACAGAAGGTCTGGAAGAGATTTTATTTGCAACCAAGCCTCGGCACTA
AAGAGACTAAGGACCTCCACAGTTCCCTGGCCGCGTGAACTCCGGGCCTTTGGCCCATTC
CCTGCACACCCGGGGACTTCAGCAGACCCTGCGGGCAGCCTCCCGTGGTGCTGCTGCATC
CACTCAATGATGACGCTACCTGAGCACCTTGTCAGCATCGAACAATCTACCAGCCCACCA
GTGCTGAAGAGGCTTTAGAGACCTGTGACCGACAGTTTTTAAGAGCTTATATGGCAGCTT
CCTTTCTACCTTGTTTTCCTTTTGGGCATGATGTTCTAACCTTGCAATAGAAGCACAAGC
TGTAAATCTAAAAAGCACTTTTTTAAAAAGATATAAAGAAAAATTGGATGTAATAAATAA
GATTGTGGAAGGCTTTATGTGAAAAAAAAAGTTGAATGTTATAGTAAAAGAAAAAGATAT
TTATGTATGTACAGTTTGCTAAAGCCAAGTTTTGTTTGTATCGATTTCTTTGCATTTATT
ATAGATACTATGAAATAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               205-338, - strand, RNAz p=0.999923

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               205-338, - strand, RNAz p=0.999923

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               205-338, ip44b04.g1 Brain - Cerebellum Library (DOGEST8) Canis familiaris 
(gb|CN004221.1|), blast E-value=0.00000000003, identity=82.09%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               205-338, ip44b04.g1 Brain - Cerebellum Library (DOGEST8) Canis familiaris 
(gb|CN004221.1|), blast E-value=0.00000000003, identity=82.09%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-977, gnl|bosTau2|chr9 (52121753-52122724)
               

               
               2-977, gnl|Hg17|chr6 (152535916-152534936)
               

               
               2-977, gnl|Mm7|chr10 (5324488-5326534)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-977, gnl|bosTau2|chr9 (52121753-52122724)
               

               
               2-977, gnl|Hg17|chr6 (152535916-152534936)
               

               
               2-977, gnl|Mm7|chr10 (5324488-5326534)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               cbe (0.717703)
               

               
               che (0.545256)
               

               
               cmu (0.372787)
               

               
               sto (0.359648)
               

               
               cki (0.330469)
               

               
               bfe (0.299715)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               che (0.545256)
               

               
               cmu (0.372787)
               

               
               sto (0.359648)
               

               
               cki (0.330469)
               

               
               bfe (0.299715)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	2-977, gnl\|bosTau2\|chr9 (52121753-52122724)
	2-977, gnl\|Hg17\|chr6 (152535916-152534936)
	2-977, gnl\|Mm7\|chr10 (5324488-5326534)

	cbe (0.717703)
	che (0.545256)
	cmu (0.372787)
	sto (0.359648)
	cki (0.330469)
	bfe (0.299715)
	cst (0.280073)
	fce (0.271592)
	ssp (0.271039)
	eye (0.170503)
	fhi (0.169578)
	csk (0.140746)
	ova (0.129132)
	cbr (0.127975)
	thg (0.126791)
	pgl (0.118483)
	nbm (0.0993246)
	eje (0.0988338)