Ss1.1-rcki33_n14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCATGGTTTTCATGAAGACCTCGAGATAACAAAACTATTTTCTTTACATGCGTCTCCT CTGATCCTGTGGAGATGAAAATTGACATCCACAGTCATATTCTACCAAAAGAATGGCCAG ATCTAAAGAAGAGATTTGGTTACGGAGGCTGGGTGGAGCTCCAACACCACAGCGAGGGAG AAGCAAAGATGCTGAAAGATGGGAAGGTCTTCAGAGTGGTCCAAGAGAACTGCTGGAATC CAGAAGTCCGTCTTAGAGAAATGGACCAAACAGGAGTGACCGTGCAAGCCCTTTCCACGG TTCCGGTTATGTTTAGCTACTGGGCCAAACCTCAGGACACTTTAGACCTGTGCCAGCTTC TAAACAACGACCTAGCTGCCACTGTTGCGAGCCACCCCAAGAGGTTTGTGGGTCTGGGGA CGTTGCCTATGCAGGCCCCTGAGCTGGCTGTCAAGGAGATGGAGCGCTGCGTGAAGGAGC TGGGCTTCCCGGGGGTTCAGATCGGCTCCCACATCAACGAGTGGGACCTGAACGCGCAAG AACTCTTCCCTGTGTACGCAGAGGCTGAAAAGCTGAACTGTTCCCTATTTGTGCACCCCT GGGACATGCAGATGGATGGACGGATGGCCAAATACTGGTTCCCTTGGCTCATAGGAATGC CAGCAGAGACCACCACAGCCATTTGCTCTATGATCATGGGCGGAGTGTTTGAAAAGTTTC CTAAACTGAAAGTATGTTTTGCGCATGGAGGTGGTTCCTTCCCCTTCACAGTAGGAAGAA TTGCCCATGGATTCCACGTGCGTCCGGACCTGTGTGCCCAGGACAATTCAATCAACCCAA AGGAATACCTTGGTTCCTTTTACACGGACTCCTTGGTTCATGATCCTCTGGCCCTCAAGC TATTAACAGATGTCATAGGAAAGGATAAAGTCATTTTGGGAACTGATTACCCCTTTCCAC TAGGTGAGCTGGAACCTGGGAAACTGATAGACTCCATGGAAGAATTTGATGCAGAAACTA AGGATAAACTCAAAGCTGGCAATGCCCTAGCATTTTTGGGTCTTGAGAGACAACAATTTG AATGACTGAATTTACAACAAAGGCAAACACTCAAGAAGATACTTTATTTTTGTTTTTAAG TATGTATCACACATGCATTACTAAAATCCTATTTTGAACTATTTATCCAGAAATAGAATA TACCCAAATATACCAAATTATTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCATGGTTTTCATGAAGACCTCGAGATAACAAAACTATTTTCTTTACATGCGTCTCCT CTGATCCTGTGGAGATGAAAATTGACATCCACAGTCATATTCTACCAAAAGAATGGCCAG ATCTAAAGAAGAGATTTGGTTACGGAGGCTGGGTGGAGCTCCAACACCACAGCGAGGGAG AAGCAAAGATGCTGAAAGATGGGAAGGTCTTCAGAGTGGTCCAAGAGAACTGCTGGAATC CAGAAGTCCGTCTTAGAGAAATGGACCAAACAGGAGTGACCGTGCAAGCCCTTTCCACGG TTCCGGTTATGTTTAGCTACTGGGCCAAACCTCAGGACACTTTAGACCTGTGCCAGCTTC TAAACAACGACCTAGCTGCCACTGTTGCGAGCCACCCCAAGAGGTTTGTGGGTCTGGGGA CGTTGCCTATGCAGGCCCCTGAGCTGGCTGTCAAGGAGATGGAGCGCTGCGTGAAGGAGC TGGGCTTCCCGGGGGTTCAGATCGGCTCCCACATCAACGAGTGGGACCTGAACGCGCAAG AACTCTTCCCTGTGTACGCAGAGGCTGAAAAGCTGAACTGTTCCCTATTTGTGCACCCCT GGGACATGCAGATGGATGGACGGATGGCCAAATACTGGTTCCCTTGGCTCATAGGAATGC CAGCAGAGACCACCACAGCCATTTGCTCTATGATCATGGGCGGAGTGTTTGAAAAGTTTC CTAAACTGAAAGTATGTTTTGCGCATGGAGGTGGTTCCTTCCCCTTCACAGTAGGAAGAA TTGCCCATGGATTCCACGTGCGTCCGGACCTGTGTGCCCAGGACAATTCAATCAACCCAA AGGAATACCTTGGTTCCTTTTACACGGACTCCTTGGTTCATGATCCTCTGGCCCTCAAGC TATTAACAGATGTCATAGGAAAGGATAAAGTCATTTTGGGAACTGATTACCCCTTTCCAC TAGGTGAGCTGGAACCTGGGAAACTGATAGACTCCATGGAAGAATTTGATGCAGAAACTA AGGATAAACTCAAAGCTGGCAATGCCCTAGCATTTTTGGGTCTTGAGAGACAACAATTTG AATGACTGAATTTACAACAAAGGCAAACACTCAAGAAGATACTTTATTTTTGTTTTTAAG TATGTATCACACATGCATTACTAAAATCCTATTTTGAACTATTTATCCAGAAATAGAATA TACCCAAATATACCAAATTATTCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-131, gnl|bosTau2|chr2 (38642430-38642300) | |
| 1-131, gnl|Hg17|chr2 (135429914-135430041) | |
| 1-131, gnl|Mm7|chr1 (127608936-127609070) | |
| 323-548, gnl|bosTau2|chr2 (38619769-38619544) | |
| 323-548, gnl|Hg17|chr2 (135454696-135454921) | |
| 323-548, gnl|Mm7|chr1 (127628516-127628741) | |
| 746-924, gnl|bosTau2|chr2 (38610769-38610591) | |
| 746-924, gnl|canFam2|chr19 (40721455-40721645) | |
| 746-924, gnl|danRer3|chr19 (5005939-5005756) | |
| 746-924, gnl|echTel1|scaffold_284198 (39245-39056) | |
| 746-924, gnl|fr1|chrUn (49111397-49111208) | |
| 746-924, gnl|galGal2|chr7 (31132946-31133135) | |
| 746-924, gnl|hg17|chr2 (135463761-135463951) | |
| 746-924, gnl|Hg17|chr2 (135463766-135463944) | |
| 746-924, gnl|loxAfr1|scaffold_2147 (48351-48540) | |
| 746-924, gnl|mm7|chr1 (127639194-127639366) | |
| 746-924, gnl|Mm7|chr1 (127639182-127639360) | |
| 746-924, gnl|monDom2|scaffold_2 (20573527-20573717) | |
| 746-924, gnl|oryCun1|scaffold_198417 (3064-2874) | |
| 746-924, gnl|panTro1|chr13 (24453440-24453630) | |
| 746-924, gnl|rheMac2|chr13 (117301307-117301117) | |
| 746-924, gnl|rn3|chr13 (40570585-40570401) | |
| 746-924, gnl|tetNig1|chr2 (15802876-15803070) | |
| 746-924, gnl|xenTro1|scaffold_921 (148604-148423) | |
| 1021-1224, gnl|bosTau2|chr2 (38582554-38582351) | |
| 1021-1224, gnl|Hg17|chr2 (135493098-135493299) | |
| 1021-1224, gnl|Mm7|chr1 (127645809-127646097) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-131, gnl|bosTau2|chr2 (38642430-38642300) | |
| 1-131, gnl|Hg17|chr2 (135429914-135430041) | |
| 1-131, gnl|Mm7|chr1 (127608936-127609070) | |
| 323-548, gnl|bosTau2|chr2 (38619769-38619544) | |
| 323-548, gnl|Hg17|chr2 (135454696-135454921) | |
| 323-548, gnl|Mm7|chr1 (127628516-127628741) | |
| 746-924, gnl|bosTau2|chr2 (38610769-38610591) | |
| 746-924, gnl|canFam2|chr19 (40721455-40721645) | |
| 746-924, gnl|danRer3|chr19 (5005939-5005756) | |
| 746-924, gnl|echTel1|scaffold_284198 (39245-39056) | |
| 746-924, gnl|fr1|chrUn (49111397-49111208) | |
| 746-924, gnl|galGal2|chr7 (31132946-31133135) | |
| 746-924, gnl|hg17|chr2 (135463761-135463951) | |
| 746-924, gnl|Hg17|chr2 (135463766-135463944) | |
| 746-924, gnl|loxAfr1|scaffold_2147 (48351-48540) | |
| 746-924, gnl|mm7|chr1 (127639194-127639366) | |
| 746-924, gnl|Mm7|chr1 (127639182-127639360) | |
| 746-924, gnl|monDom2|scaffold_2 (20573527-20573717) | |
| 746-924, gnl|oryCun1|scaffold_198417 (3064-2874) | |
| 746-924, gnl|panTro1|chr13 (24453440-24453630) | |
| 746-924, gnl|rheMac2|chr13 (117301307-117301117) | |
| 746-924, gnl|rn3|chr13 (40570585-40570401) | |
| 746-924, gnl|tetNig1|chr2 (15802876-15803070) | |
| 746-924, gnl|xenTro1|scaffold_921 (148604-148423) | |
| 1021-1224, gnl|bosTau2|chr2 (38582554-38582351) | |
| 1021-1224, gnl|Hg17|chr2 (135493098-135493299) | |
| 1021-1224, gnl|Mm7|chr1 (127645809-127646097) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cki (1.32188) | |
| kid (0.389206) | |
| fbs (0.175346) | |
| cli (0.152812) | |
| lun (0.150489) | |
| ecc (0.115035) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (1.32188) | |
| kid (0.389206) | |
| fbs (0.175346) | |
| cli (0.152812) | |
| lun (0.150489) | |
| ecc (0.115035) |