Non-Coding RNA Search

Ss1.1-rcki33_n16.5

Sequence:


               
               GGACTGCAAGGGAGTTTATGGCAAAAGATAAAAGTGTCTCTAATTTTACTGAAGATTCTT
TGAGGCAGGGTGGCAGAGAGTCACACGGAAGCAGAAGAACCTGCCAGACCAGAGCAGACC
TCTGCGTGCTGACAAAGGGAATGATGATCAGCCGTCGTCGTCGTCAGAGAGGCCTGGGCG
GAGACAGAAGGCCCCAGCAAGCAGGAGAATGCTCCGTAGACACACAGTTGATGATGCAGT
TGTATCCAAGGGCCCGGAGACTGCCAGCAACCTGATCGTTCCCCAAGAGGCTAGCATTTC
CCAGTCTTAACAGTAATAGGAGTTATTTACTGCCAAGACGCCAGTCCTCCACAAGATGCT
GAGCATGAATGAAGCTTAGAACTCAGTGTACTATTTGGCTTGAGAGAAAGGCGGAAAGGC
CCTGCAAGCTTTTCTGTGGCTGATGGAAAGAACGCAGCAACAGAAAGTCATCAGCATCCC
CTTCCTCTTCAAAGCTAATGAATGCACTTGCAAAGGAGCGGAAAAAAATTCCAGTTGTGT
CCAGACCCTAGGACCAGGGTGTATGCTTTAAGTATTAAGGTTCCTTGGCTACAGTGAGAG
GTTTCATCACCAGACTCTGACCTCCTCCTAACGAAAGGTGCTAAACCTTTGCGATGTGTA
TAAACTAGCAAACCACAGCTAAAAGACTATCTCCCTTTGGGAGGAGCTGAAGAGAAGCAG
TTTAAATTTCATGGTACTGTGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACTGCAAGGGAGTTTATGGCAAAAGATAAAAGTGTCTCTAATTTTACTGAAGATTCTT
TGAGGCAGGGTGGCAGAGAGTCACACGGAAGCAGAAGAACCTGCCAGACCAGAGCAGACC
TCTGCGTGCTGACAAAGGGAATGATGATCAGCCGTCGTCGTCGTCAGAGAGGCCTGGGCG
GAGACAGAAGGCCCCAGCAAGCAGGAGAATGCTCCGTAGACACACAGTTGATGATGCAGT
TGTATCCAAGGGCCCGGAGACTGCCAGCAACCTGATCGTTCCCCAAGAGGCTAGCATTTC
CCAGTCTTAACAGTAATAGGAGTTATTTACTGCCAAGACGCCAGTCCTCCACAAGATGCT
GAGCATGAATGAAGCTTAGAACTCAGTGTACTATTTGGCTTGAGAGAAAGGCGGAAAGGC
CCTGCAAGCTTTTCTGTGGCTGATGGAAAGAACGCAGCAACAGAAAGTCATCAGCATCCC
CTTCCTCTTCAAAGCTAATGAATGCACTTGCAAAGGAGCGGAAAAAAATTCCAGTTGTGT
CCAGACCCTAGGACCAGGGTGTATGCTTTAAGTATTAAGGTTCCTTGGCTACAGTGAGAG
GTTTCATCACCAGACTCTGACCTCCTCCTAACGAAAGGTGCTAAACCTTTGCGATGTGTA
TAAACTAGCAAACCACAGCTAAAAGACTATCTCCCTTTGGGAGGAGCTGAAGAGAAGCAG
TTTAAATTTCATGGTACTGTGGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               256-366, - strand, RNAz p=0.591685

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               256-366, - strand, RNAz p=0.591685

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               56-744, gnl|bosTau2|chr18 (35455250-35455919)
               

               
               56-744, gnl|Hg17|chr19 (37781132-37780434)
               

               
               56-744, gnl|Mm7|chr7 (32529030-32529633)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-744, gnl|bosTau2|chr18 (35455250-35455919)
               

               
               56-744, gnl|Hg17|chr19 (37781132-37780434)
               

               
               56-744, gnl|Mm7|chr7 (32529030-32529633)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sin (0.174948)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               cbl (0.114797)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               cbl (0.114797)

	56-744, gnl\|bosTau2\|chr18 (35455250-35455919)
	56-744, gnl\|Hg17\|chr19 (37781132-37780434)
	56-744, gnl\|Mm7\|chr7 (32529030-32529633)