Ss1.1-rcki34_b23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGGCCCTGAGCAAGGACCAGGACTTCAACCCGGCGGTGCCACTGGTGGAGAACTTCTG CCGCAAGCCAGACGGGGACCAGGAGGGCGCGTGGTGTTACGTGGCGGGACAGCCTGGCGA CTTTGAGTACTGCGACCTGGACTACTGCGAGGAGCCAGTGGATGAGGAGGTGGGAGATGC GCTGGGCGAGAACGCGGATGCGGCCATCGAGGGACGCACCACCGCGGACGATTTCCAGCC CTTCTTCAATGAGAAGACCTTTGGCGCCGGGGAGGCGGACTGTGGGCTGCGGCCTCTGTT CGAGAAGTCGTCCTTGGAGGACAAAACGGAAAAGGAGCTTTTCGAGTCCTACATCGAAGG GCGCATCGTGGAGGGCTCGGACGCCGAGATTGGCCTCGCACCCTGGCAGGTGATGATTTT CCGGAAGAGTCCCCAGGAGCTGCTGTGCGGGGCCAGCCTCATCAGTGACCGCTGGGTCCT CACCGCTGCCCACTGTCTTCTCTACCCACCTTGGGACAAAAACTTCACTGAGAATGACCT TCTGGTGCGCATTGGCAAGCACTCCCGCACCAGGTATGAGCGGAACATCGAAAAGATCTC TATGCTGGAAAAGATCTACATCCACCCCAGGTACAACTGGAGGGAGAACCTGGACCGGGA CATCGCCCTACTGAAGCTCAGGAAGCCCATCACCTTCAGCGACTTCATCCACCCCGTGTG CCTGCCGGACAAGGAGACGGCAACCAAGTTGCTCCGGGCTGGATACAAGGGGCGGGTGAC AGGCTGGGGCAACCTGAAGGAGACCTGGACAACCAGCGCCAGCGAGGTGCAGCCCAGCGT CCTGCAGGTGGTGAACCTGCCCATCGTGGAGCGGCTGGTCTGTAAGGCCTCCACCCGGAT CCGCATCACGGACAACATGTTCTGTGCTGGTTACAAGCCTGACGAAGGGAAACGAGGGGA TGCTTGTGAAGGCGACAGTGGGGGACCCTTTGTCATGAAGAGCCCCTTTAACAACCGCTG GTATCAAATGGGCATCGTCTCATGGGGTGAAGGCTGTGACAGGGATGGAAAATATGGCTT CTACACACATGTGTTCCGCCTGAAGAAGTGGATGCAGAAGGTCATTGATCGGTTTGGAGG TTAGGGGCCACCTACGTTCTAGGCGCCTCACTGCAGAATCGCAGAAGCCAATCCAGTGAA AGAATTATTTTTGTGGTTTGTTCTTAAAAGTGTATTTCTCAATAAAAGCGACTCTATCAA TGAAAAAAAAAAAAAAACCGTAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGGCCCTGAGCAAGGACCAGGACTTCAACCCGGCGGTGCCACTGGTGGAGAACTTCTG CCGCAAGCCAGACGGGGACCAGGAGGGCGCGTGGTGTTACGTGGCGGGACAGCCTGGCGA CTTTGAGTACTGCGACCTGGACTACTGCGAGGAGCCAGTGGATGAGGAGGTGGGAGATGC GCTGGGCGAGAACGCGGATGCGGCCATCGAGGGACGCACCACCGCGGACGATTTCCAGCC CTTCTTCAATGAGAAGACCTTTGGCGCCGGGGAGGCGGACTGTGGGCTGCGGCCTCTGTT CGAGAAGTCGTCCTTGGAGGACAAAACGGAAAAGGAGCTTTTCGAGTCCTACATCGAAGG GCGCATCGTGGAGGGCTCGGACGCCGAGATTGGCCTCGCACCCTGGCAGGTGATGATTTT CCGGAAGAGTCCCCAGGAGCTGCTGTGCGGGGCCAGCCTCATCAGTGACCGCTGGGTCCT CACCGCTGCCCACTGTCTTCTCTACCCACCTTGGGACAAAAACTTCACTGAGAATGACCT TCTGGTGCGCATTGGCAAGCACTCCCGCACCAGGTATGAGCGGAACATCGAAAAGATCTC TATGCTGGAAAAGATCTACATCCACCCCAGGTACAACTGGAGGGAGAACCTGGACCGGGA CATCGCCCTACTGAAGCTCAGGAAGCCCATCACCTTCAGCGACTTCATCCACCCCGTGTG CCTGCCGGACAAGGAGACGGCAACCAAGTTGCTCCGGGCTGGATACAAGGGGCGGGTGAC AGGCTGGGGCAACCTGAAGGAGACCTGGACAACCAGCGCCAGCGAGGTGCAGCCCAGCGT CCTGCAGGTGGTGAACCTGCCCATCGTGGAGCGGCTGGTCTGTAAGGCCTCCACCCGGAT CCGCATCACGGACAACATGTTCTGTGCTGGTTACAAGCCTGACGAAGGGAAACGAGGGGA TGCTTGTGAAGGCGACAGTGGGGGACCCTTTGTCATGAAGAGCCCCTTTAACAACCGCTG GTATCAAATGGGCATCGTCTCATGGGGTGAAGGCTGTGACAGGGATGGAAAATATGGCTT CTACACACATGTGTTCCGCCTGAAGAAGTGGATGCAGAAGGTCATTGATCGGTTTGGAGG TTAGGGGCCACCTACGTTCTAGGCGCCTCACTGCAGAATCGCAGAAGCCAATCCAGTGAA AGAATTATTTTTGTGGTTTGTTCTTAAAAGTGTATTTCTCAATAAAAGCGACTCTATCAA TGAAAAAAAAAAAAAAACCGTAAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-154, gnl|bosTau2|chr15 (48483412-48483565) | |
| 1-154, gnl|canFam2|chr18 (45828506-45828293) | |
| 1-154, gnl|danRer3|chr7 (28969598-28969811) | |
| 1-154, gnl|dasNov1|scaffold_36673 (409-202) | |
| 1-154, gnl|echTel1|scaffold_318661 (9145-8938) | |
| 1-154, gnl|fr1|chrUn (171913420-171913228) | |
| 1-154, gnl|galGal2|chr5 (20730347-20730144) | |
| 1-154, gnl|hg17|chr11 (46704098-46704305) | |
| 1-154, gnl|Hg17|chr11 (46704151-46704304) | |
| 1-154, gnl|loxAfr1|scaffold_28476 (10794-10587) | |
| 1-154, gnl|mm7|chr2 (91481428-91481221) | |
| 1-154, gnl|Mm7|chr2 (91481373-91481220) | |
| 1-154, gnl|monDom2|scaffold_33 (12693289-12693496) | |
| 1-154, gnl|oryCun1|scaffold_194710 (3815-3608) | |
| 1-154, gnl|panTro1|chr9 (47224366-47224573) | |
| 1-154, gnl|rheMac2|chr14 (25391856-25391649) | |
| 1-154, gnl|rn3|chr3 (75908657-75908453) | |
| 1-154, gnl|tetNig1|chr3 (1186883-1186674) | |
| 1-154, gnl|xenTro1|scaffold_76 (2217374-2217578) | |
| 392-575, gnl|bosTau2|chr15 (48485159-48485343) | |
| 392-575, gnl|Hg17|chr11 (46706107-46706291) | |
| 392-575, gnl|Mm7|chr2 (91480047-91479865) | |
| 750-930, gnl|bosTau2|chr15 (48486264-48486444) | |
| 750-930, gnl|Hg17|chr11 (46707508-46707688) | |
| 750-930, gnl|Mm7|chr2 (91479217-91479037) | |
| 999-1263, gnl|bosTau2|chr15 (48492940-48493205) | |
| 999-1263, gnl|Hg17|chr11 (46717389-46717632) | |
| 999-1263, gnl|Mm7|chr2 (91476291-91476035) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-154, gnl|bosTau2|chr15 (48483412-48483565) | |
| 1-154, gnl|canFam2|chr18 (45828506-45828293) | |
| 1-154, gnl|danRer3|chr7 (28969598-28969811) | |
| 1-154, gnl|dasNov1|scaffold_36673 (409-202) | |
| 1-154, gnl|echTel1|scaffold_318661 (9145-8938) | |
| 1-154, gnl|fr1|chrUn (171913420-171913228) | |
| 1-154, gnl|galGal2|chr5 (20730347-20730144) | |
| 1-154, gnl|hg17|chr11 (46704098-46704305) | |
| 1-154, gnl|Hg17|chr11 (46704151-46704304) | |
| 1-154, gnl|loxAfr1|scaffold_28476 (10794-10587) | |
| 1-154, gnl|mm7|chr2 (91481428-91481221) | |
| 1-154, gnl|Mm7|chr2 (91481373-91481220) | |
| 1-154, gnl|monDom2|scaffold_33 (12693289-12693496) | |
| 1-154, gnl|oryCun1|scaffold_194710 (3815-3608) | |
| 1-154, gnl|panTro1|chr9 (47224366-47224573) | |
| 1-154, gnl|rheMac2|chr14 (25391856-25391649) | |
| 1-154, gnl|rn3|chr3 (75908657-75908453) | |
| 1-154, gnl|tetNig1|chr3 (1186883-1186674) | |
| 1-154, gnl|xenTro1|scaffold_76 (2217374-2217578) | |
| 392-575, gnl|bosTau2|chr15 (48485159-48485343) | |
| 392-575, gnl|Hg17|chr11 (46706107-46706291) | |
| 392-575, gnl|Mm7|chr2 (91480047-91479865) | |
| 750-930, gnl|bosTau2|chr15 (48486264-48486444) | |
| 750-930, gnl|Hg17|chr11 (46707508-46707688) | |
| 750-930, gnl|Mm7|chr2 (91479217-91479037) | |
| 999-1263, gnl|bosTau2|chr15 (48492940-48493205) | |
| 999-1263, gnl|Hg17|chr11 (46717389-46717632) | |
| 999-1263, gnl|Mm7|chr2 (91476291-91476035) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cli (2.13936) | |
| lun (0.601956) | |
| cki (0.495704) | |
| eli (0.455443) | |
| sme (0.305437) | |
| fli (0.202881) | |
| nco (0.161734) | |
| eep (0.122564) | |
| eru (0.120048) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (2.13936) | |
| lun (0.601956) | |
| cki (0.495704) | |
| eli (0.455443) | |
| sme (0.305437) | |
| fli (0.202881) | |
| nco (0.161734) | |
| eep (0.122564) | |
| eru (0.120048) |