Ss1.1-rcki34_h7.5
|
GTGCACGGTGGCCTGTGTGTCACCCCAGGAGCAGTGACCCATGCTGGACGGACAGGCACA
TGGTCTGGCCCTTGCTCCTGGAAGTGGGATGGGAGTCCCAGGCGCAGACACGGAGCAGGA
AGGCAGGCCGCTCCGCAGGGCCGGCCTCTGCTGCCCGAGTTGCCCACTTTCTCCAGAGCA
GAGGGCGGCCCTGTACCTGCTGAGCACACTTTCTGCCGGCTGTGACCCCTTCTGTTTCTG
CTGTCGTGTGCAGCGGTCACGTCCGAGAGAGGTCAGCGAGCACGAGATGACGCCCACGGG
TCAGTGGACAGGCTGCGTGTCCCGCGCCAAGCCTCAGAGGGGGTGGGAGGAGAGGCTGGC
GCTTTGAGCCAGAAACCAGCAGGTCTTAGGTCAGATTCAGGTTCTGGATTCAAACCCGCA
CCAAGGGCATTCCCAGTGTCTATCAGAACCGGGTTTGGTTTCAGTTGGGACAGATGGAGG
GTTGTTTTGTCTGTTGAAACTGTTTGTAGTTTTTTTCCTTTTGTTCTCTCTCATTCCATT
TCTGCCTTAATTTTGGCTCCGTGGCGGGGAGGCAAGCCCAAACCAACACTTTGTCATCGC
TGTAGTGGTCGCGTTGTGCCCCCGGGGCCAGTGACGTGCCATTGGGGTGGGCTCTGAGCC
AGACTCCTGCCCGGCACCCCGCCTGCCCACCTGCCCCATTTCCCTTGCCCTCGCGGTAGA
GCCTGCGGCCTGCCAACCAGTTAAACCTTCTTCAGCTCTCTCTCGATCATCTGTCTTTCC
AAAGAAGAGAGAGGGACATACTTTGAAGTCTGTACTTGAAAACCGTCTGAAGGTGTTTTC
TCCCCACTCCCCAGGTGAAGCACTGAGACTCTTCCACCCCCCCGGCCCCCGCCCCCCGCC
CCCGGTCCGCTGCCGTGTGTTTAGGAGGCCCCAGACCTTCACGGTGTCTTCGAGGCCCGA
CCCCTGGGTTTCCTTTGGGGTTTCCTTCCTTCGTTTGGAGTTGGGTTTTGCTTTTCTGTG
TTTTCTATGTATCTTGTTCAATGTGTCGAGGTGGAGCTTCACTGCAGCAGGAGCAGAGCA
GAGTGTACATTCTGATTTGCTACGTTTATATATATCTTGAAGCTAAATGTATATATGAGT
AGTTTGCCATGAGATAACACAGTGTAAACAGTAGACACCCAGAAATTGTGACTTCTGTGT
TCTCTCCATTTGAGTATTTTGTAATTTTTTTGAAATATTTGTGGACATAAATAAAATGAA
GCTACACTACAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTGCACGGTGGCCTGTGTGTCACCCCAGGAGCAGTGACCCATGCTGGACGGACAGGCACA
TGGTCTGGCCCTTGCTCCTGGAAGTGGGATGGGAGTCCCAGGCGCAGACACGGAGCAGGA
AGGCAGGCCGCTCCGCAGGGCCGGCCTCTGCTGCCCGAGTTGCCCACTTTCTCCAGAGCA
GAGGGCGGCCCTGTACCTGCTGAGCACACTTTCTGCCGGCTGTGACCCCTTCTGTTTCTG
CTGTCGTGTGCAGCGGTCACGTCCGAGAGAGGTCAGCGAGCACGAGATGACGCCCACGGG
TCAGTGGACAGGCTGCGTGTCCCGCGCCAAGCCTCAGAGGGGGTGGGAGGAGAGGCTGGC
GCTTTGAGCCAGAAACCAGCAGGTCTTAGGTCAGATTCAGGTTCTGGATTCAAACCCGCA
CCAAGGGCATTCCCAGTGTCTATCAGAACCGGGTTTGGTTTCAGTTGGGACAGATGGAGG
GTTGTTTTGTCTGTTGAAACTGTTTGTAGTTTTTTTCCTTTTGTTCTCTCTCATTCCATT
TCTGCCTTAATTTTGGCTCCGTGGCGGGGAGGCAAGCCCAAACCAACACTTTGTCATCGC
TGTAGTGGTCGCGTTGTGCCCCCGGGGCCAGTGACGTGCCATTGGGGTGGGCTCTGAGCC
AGACTCCTGCCCGGCACCCCGCCTGCCCACCTGCCCCATTTCCCTTGCCCTCGCGGTAGA
GCCTGCGGCCTGCCAACCAGTTAAACCTTCTTCAGCTCTCTCTCGATCATCTGTCTTTCC
AAAGAAGAGAGAGGGACATACTTTGAAGTCTGTACTTGAAAACCGTCTGAAGGTGTTTTC
TCCCCACTCCCCAGGTGAAGCACTGAGACTCTTCCACCCCCCCGGCCCCCGCCCCCCGCC
CCCGGTCCGCTGCCGTGTGTTTAGGAGGCCCCAGACCTTCACGGTGTCTTCGAGGCCCGA
CCCCTGGGTTTCCTTTGGGGTTTCCTTCCTTCGTTTGGAGTTGGGTTTTGCTTTTCTGTG
TTTTCTATGTATCTTGTTCAATGTGTCGAGGTGGAGCTTCACTGCAGCAGGAGCAGAGCA
GAGTGTACATTCTGATTTGCTACGTTTATATATATCTTGAAGCTAAATGTATATATGAGT
AGTTTGCCATGAGATAACACAGTGTAAACAGTAGACACCCAGAAATTGTGACTTCTGTGT
TCTCTCCATTTGAGTATTTTGTAATTTTTTTGAAATATTTGTGGACATAAATAAAATGAA
GCTACACTACAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
979-1281, gnl|bosTau2|chr22 (27962206-27961906) |
|
979-1281, gnl|Hg17|chr1 (8347035-8346730) |
|
979-1281, gnl|Mm7|chr18 (85489520-85489204) |
| |
|
1048-1271, gnl|bosTau2|chr16 (30477383-30477160) |
|
1048-1271, gnl|canFam2|chr5 (64866918-64867166) |
|
1048-1271, gnl|danRer3|chr23 (31503491-31503249) |
|
1048-1271, gnl|echTel1|scaffold_105812 (1254-1008) |
|
1048-1271, gnl|galGal2|chr21 (2886656-2886899) |
|
1048-1271, gnl|hg17|chr1 (8346714-8346955) |
|
1048-1271, gnl|Hg17|chr1 (8346954-8346731) |
|
1048-1271, gnl|loxAfr1|scaffold_9570 (63763-63510) |
|
1048-1271, gnl|mm7|chr4 (149611526-149611283) |
|
1048-1271, gnl|Mm7|chr4 (149611283-149611505) |
|
1048-1271, gnl|monDom2|scaffold_148 (1468972-1468730) |
|
1048-1271, gnl|oryCun1|scaffold_83463 (2393-2149) |
|
1048-1271, gnl|panTro1|chr1 (8345616-8345857) |
|
1048-1271, gnl|rheMac2|chr1 (11378955-11379196) |
|
1048-1271, gnl|rn3|chr5 (167787477-167787234) |
|
1048-1271, gnl|tetNig1|chr9 (2747073-2747319) |
|
1048-1271, gnl|xenTro1|scaffold_464 (646365-646607) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
979-1281, gnl|bosTau2|chr22 (27962206-27961906) |
|
979-1281, gnl|Hg17|chr1 (8347035-8346730) |
|
979-1281, gnl|Mm7|chr18 (85489520-85489204) |
| |
|
1048-1271, gnl|bosTau2|chr16 (30477383-30477160) |
|
1048-1271, gnl|canFam2|chr5 (64866918-64867166) |
|
1048-1271, gnl|danRer3|chr23 (31503491-31503249) |
|
1048-1271, gnl|echTel1|scaffold_105812 (1254-1008) |
|
1048-1271, gnl|galGal2|chr21 (2886656-2886899) |
|
1048-1271, gnl|hg17|chr1 (8346714-8346955) |
|
1048-1271, gnl|Hg17|chr1 (8346954-8346731) |
|
1048-1271, gnl|loxAfr1|scaffold_9570 (63763-63510) |
|
1048-1271, gnl|mm7|chr4 (149611526-149611283) |
|
1048-1271, gnl|Mm7|chr4 (149611283-149611505) |
|
1048-1271, gnl|monDom2|scaffold_148 (1468972-1468730) |
|
1048-1271, gnl|oryCun1|scaffold_83463 (2393-2149) |
|
1048-1271, gnl|panTro1|chr1 (8345616-8345857) |
|
1048-1271, gnl|rheMac2|chr1 (11378955-11379196) |
|
1048-1271, gnl|rn3|chr5 (167787477-167787234) |
|
1048-1271, gnl|tetNig1|chr9 (2747073-2747319) |
|
1048-1271, gnl|xenTro1|scaffold_464 (646365-646607) |
|
nms (0.641574) |
|
fcc (0.39557) |
|
csk (0.281492) |
|
fce (0.271592) |
|
nmm (0.265604) |
|
cbe (0.239234) |
|
col (0.195008) |
|
gul (0.177588) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
cki (0.165235) |
|
csp (0.161186) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
cag (0.151194) |
|
ste (0.135208) |
|
pgl (0.118483) |
|
jca (0.11396) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
|
nms (0.641574) |
|
fcc (0.39557) |
|
csk (0.281492) |
|
fce (0.271592) |
|
nmm (0.265604) |
|
cbe (0.239234) |
|
col (0.195008) |
|
gul (0.177588) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
cki (0.165235) |
|
csp (0.161186) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
cag (0.151194) |
|
ste (0.135208) |
|
pgl (0.118483) |
|
jca (0.11396) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
