Non-Coding RNA Search

Ss1.1-rcki34_n11.5

Sequence:


               
               CATCTGGGAAGGCTGCTGCAGACTGGAGCCCACACTGAAGGATGCAAAAATTGTTGGTGA
ATATACTGGCGGGCGGCCAGTACGCCCCCAGGTTCGGCTAGAAAGAGAACAGCTTCGCTT
TGGATCTTCAAACACAGAGGTCATCCACAACTATGGCCATGGAGGCTATGGGCTCACCAT
CCACTGGGGCTGTGCCCTAGAGGTGGCCAAGCTCTTTGGGAAAGTCCTGGAAGAAAGGAA
TTTGCTCACAATGCCACCATCCCACCTCTGAAGACATCAGTGACCACCGCCTCCCCCACA
AAACTCCCTGCTCCCCTCAGCCAACTACTCAATGTGCTCCATTGATTCCCGTTCCCCCTC
CTCCACCCCTGGCTCCTTTCTGCAAGAAGCACGAGGTGAGAGGAAACCATGAGATCAGTT
CCTGGAGGCAAGTCCAACCCTACCTGGGGCCCCTCTGATGGCTGAAGTCTTTCCACCATC
GTGGGCCTGACATTACAAAGAACAGCTGGAGGCTCTTATCCCACAAGTCCGCAGAAAGAA
GGAAAGCTCAGGAAATTCCAGTGGTGAGCAGAAAATTGGGGATGGATGGGGTTAAGTAAC
CTCATGAGAAATCACGCTAACACATTAAAAGTTCTGAAAAGTCCCACAGCTAAGACATCG
AACTGATGTCATTTGGTCCAGTCTTCCTAAACCTATCTGGCTATGGAAACTTTTGTCCCA
GAGCACCACAGAACACACTTTATGGAACATTGGAACAGATTCCATGGCAGGAAGTTATAG
GTGGAGCTGGAGGGTGGAGGAGACAGAAGAGGCAAGTCACTGAACTAGCAACGGGGGACA
CCTGTCCCACATCCAGGATTATCAATGGCATCAGCTTCCCACTGGGTGGCGCCGTGGGCA
CCATGTAACCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCTGGGAAGGCTGCTGCAGACTGGAGCCCACACTGAAGGATGCAAAAATTGTTGGTGA
ATATACTGGCGGGCGGCCAGTACGCCCCCAGGTTCGGCTAGAAAGAGAACAGCTTCGCTT
TGGATCTTCAAACACAGAGGTCATCCACAACTATGGCCATGGAGGCTATGGGCTCACCAT
CCACTGGGGCTGTGCCCTAGAGGTGGCCAAGCTCTTTGGGAAAGTCCTGGAAGAAAGGAA
TTTGCTCACAATGCCACCATCCCACCTCTGAAGACATCAGTGACCACCGCCTCCCCCACA
AAACTCCCTGCTCCCCTCAGCCAACTACTCAATGTGCTCCATTGATTCCCGTTCCCCCTC
CTCCACCCCTGGCTCCTTTCTGCAAGAAGCACGAGGTGAGAGGAAACCATGAGATCAGTT
CCTGGAGGCAAGTCCAACCCTACCTGGGGCCCCTCTGATGGCTGAAGTCTTTCCACCATC
GTGGGCCTGACATTACAAAGAACAGCTGGAGGCTCTTATCCCACAAGTCCGCAGAAAGAA
GGAAAGCTCAGGAAATTCCAGTGGTGAGCAGAAAATTGGGGATGGATGGGGTTAAGTAAC
CTCATGAGAAATCACGCTAACACATTAAAAGTTCTGAAAAGTCCCACAGCTAAGACATCG
AACTGATGTCATTTGGTCCAGTCTTCCTAAACCTATCTGGCTATGGAAACTTTTGTCCCA
GAGCACCACAGAACACACTTTATGGAACATTGGAACAGATTCCATGGCAGGAAGTTATAG
GTGGAGCTGGAGGGTGGAGGAGACAGAAGAGGCAAGTCACTGAACTAGCAACGGGGGACA
CCTGTCCCACATCCAGGATTATCAATGGCATCAGCTTCCCACTGGGTGGCGCCGTGGGCA
CCATGTAACCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               297-450, - strand, RNAz p=0.996568

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               297-450, - strand, RNAz p=0.996568

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               346-424, - strand, RNAmicro p=0.992357

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               346-424, - strand, RNAmicro p=0.992357

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               138-450, gnl|bosTau2|chr17 (35151701-35152009)
               

               
               138-450, gnl|Hg17|chr12 (107796644-107796946)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               138-450, gnl|bosTau2|chr17 (35151701-35152009)
               

               
               138-450, gnl|Hg17|chr12 (107796644-107796946)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               jej (0.197844)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cki (0.165235)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cki (0.165235)

	138-450, gnl\|bosTau2\|chr17 (35151701-35152009)
	138-450, gnl\|Hg17\|chr12 (107796644-107796946)