Non-Coding RNA Search

Ss1.1-rcki37_n5.5S

Sequence:


               
               TGAGCGCTTTGGGCAGGGAGGTGCGGGACCTGTGGGTGGACAGGGTCCTAGAGGAATGGG
GCCTGGAACTCCGGCAGGATATGGTAGAGGGAGAGAAGAGTATGAAGGCCCAAACAAAAA
ACCCCGATTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGCGCTTTGGGCAGGGAGGTGCGGGACCTGTGGGTGGACAGGGTCCTAGAGGAATGGG
GCCTGGAACTCCGGCAGGATATGGTAGAGGGAGAGAAGAGTATGAAGGCCCAAACAAAAA
ACCCCGATTTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-132, + strand, RNAz p=0.994488

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-132, + strand, RNAz p=0.994488

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-132, gnl|bosTau2|chr3 (77675911-77676042)
               

               
               1-132, gnl|canFam2|chr15 (9896694-9896608)
               

               
               1-132, gnl|dasNov1|scaffold_8323 (12663-12577)
               

               
               1-132, gnl|echTel1|scaffold_285155 (52686-52600)
               

               
               1-132, gnl|fr1|chrUn (254806121-254806038)
               

               
               1-132, gnl|galGal2|chr23 (3915664-3915578)
               

               
               1-132, gnl|hg17|chr1 (35319148-35319234)
               

               
               1-132, gnl|Hg17|chr1 (35319282-35319151)
               

               
               1-132, gnl|loxAfr1|scaffold_3833 (66602-66688)
               

               
               1-132, gnl|mm7|chr4 (126474615-126474529)
               

               
               1-132, gnl|Mm7|chr4 (126474479-126474610)
               

               
               1-132, gnl|monDom2|scaffold_43 (15310499-15310413)
               

               
               1-132, gnl|oryCun1|scaffold_174090 (177421-177336)
               

               
               1-132, gnl|panTro1|chr1 (36089809-36089895)
               

               
               1-132, gnl|rheMac2|chr1 (37981752-37981838)
               

               
               1-132, gnl|rn3|chr5 (146479024-146478938)
               

               
               1-132, gnl|tetNig1|chrUn_random (3560965-3561048)
               

               
               1-132, gnl|xenTro1|scaffold_718 (6553-6449)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-132, gnl|bosTau2|chr3 (77675911-77676042)
               

               
               1-132, gnl|canFam2|chr15 (9896694-9896608)
               

               
               1-132, gnl|dasNov1|scaffold_8323 (12663-12577)
               

               
               1-132, gnl|echTel1|scaffold_285155 (52686-52600)
               

               
               1-132, gnl|fr1|chrUn (254806121-254806038)
               

               
               1-132, gnl|galGal2|chr23 (3915664-3915578)
               

               
               1-132, gnl|hg17|chr1 (35319148-35319234)
               

               
               1-132, gnl|Hg17|chr1 (35319282-35319151)
               

               
               1-132, gnl|loxAfr1|scaffold_3833 (66602-66688)
               

               
               1-132, gnl|mm7|chr4 (126474615-126474529)
               

               
               1-132, gnl|Mm7|chr4 (126474479-126474610)
               

               
               1-132, gnl|monDom2|scaffold_43 (15310499-15310413)
               

               
               1-132, gnl|oryCun1|scaffold_174090 (177421-177336)
               

               
               1-132, gnl|panTro1|chr1 (36089809-36089895)
               

               
               1-132, gnl|rheMac2|chr1 (37981752-37981838)
               

               
               1-132, gnl|rn3|chr5 (146479024-146478938)
               

               
               1-132, gnl|tetNig1|chrUn_random (3560965-3561048)
               

               
               1-132, gnl|xenTro1|scaffold_718 (6553-6449)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               eye (0.170503)
               

               
               cki (0.165235)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               cki (0.165235)

	1-132, gnl\|bosTau2\|chr3 (77675911-77676042)
	1-132, gnl\|canFam2\|chr15 (9896694-9896608)
	1-132, gnl\|dasNov1\|scaffold_8323 (12663-12577)
	1-132, gnl\|echTel1\|scaffold_285155 (52686-52600)
	1-132, gnl\|fr1\|chrUn (254806121-254806038)
	1-132, gnl\|galGal2\|chr23 (3915664-3915578)
	1-132, gnl\|hg17\|chr1 (35319148-35319234)
	1-132, gnl\|Hg17\|chr1 (35319282-35319151)
	1-132, gnl\|loxAfr1\|scaffold_3833 (66602-66688)
	1-132, gnl\|mm7\|chr4 (126474615-126474529)
	1-132, gnl\|Mm7\|chr4 (126474479-126474610)
	1-132, gnl\|monDom2\|scaffold_43 (15310499-15310413)
	1-132, gnl\|oryCun1\|scaffold_174090 (177421-177336)
	1-132, gnl\|panTro1\|chr1 (36089809-36089895)
	1-132, gnl\|rheMac2\|chr1 (37981752-37981838)
	1-132, gnl\|rn3\|chr5 (146479024-146478938)
	1-132, gnl\|tetNig1\|chrUn_random (3560965-3561048)
	1-132, gnl\|xenTro1\|scaffold_718 (6553-6449)