Non-Coding RNA Search

Ss1.1-rcki37_p19.5

Sequence:


               
               TCAGTGCTGGCGATGGATGGGGGGGATGGGCCACACCAGGTGGCACTCCTCTGTCCTCAG
ATGTCCCAAAGGTTGGAGGACCTCTCTGTTCACTTCACACCGGGGCTCTCTTCGCAGCGG
CGAGCTGACCGGAGCAGGCTAGGCCACTTTTGTTTCTAATCAGTGTGCAAGGGTTTGAGG
CTCTCCTGTGTGTCCACACGTGCAAGAGAGCCCATCTGTGCACGCGTGCTGTGTTTCCCC
ACTTCTCTCCTCTCCCACATGTCCTTCAAAACAGATGTAAGAAATTCCTTCCCCCCCCTC
CCCCCACCTCCAGGCCCTCGGCAGGAGAAACAGAATAACCTAGCATCCTCCCCAACCTCT
GGCTGTGTATTTATACAGATGGAAATATACTTTCTATTTTGTTATCATCGTGCCTAGAAC
TCTGCCACCTTGTATAAACCCTAATGTATGCTACTTACTGGATATGAATGTATTGTACAC
TGAGGCTGTCCCGCTCCTGTACAGCTGCTTCGTTTCTTTGCGATCCATCGTATGGCTTTA
TACATGATAAAGTGAAAGAAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGTGCTGGCGATGGATGGGGGGGATGGGCCACACCAGGTGGCACTCCTCTGTCCTCAG
ATGTCCCAAAGGTTGGAGGACCTCTCTGTTCACTTCACACCGGGGCTCTCTTCGCAGCGG
CGAGCTGACCGGAGCAGGCTAGGCCACTTTTGTTTCTAATCAGTGTGCAAGGGTTTGAGG
CTCTCCTGTGTGTCCACACGTGCAAGAGAGCCCATCTGTGCACGCGTGCTGTGTTTCCCC
ACTTCTCTCCTCTCCCACATGTCCTTCAAAACAGATGTAAGAAATTCCTTCCCCCCCCTC
CCCCCACCTCCAGGCCCTCGGCAGGAGAAACAGAATAACCTAGCATCCTCCCCAACCTCT
GGCTGTGTATTTATACAGATGGAAATATACTTTCTATTTTGTTATCATCGTGCCTAGAAC
TCTGCCACCTTGTATAAACCCTAATGTATGCTACTTACTGGATATGAATGTATTGTACAC
TGAGGCTGTCCCGCTCCTGTACAGCTGCTTCGTTTCTTTGCGATCCATCGTATGGCTTTA
TACATGATAAAGTGAAAGAAAAAT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               22-564, gnl|bosTau2|chr2 (63348642-63348096)
               

               
               22-564, gnl|Hg17|chr2 (218490608-218490021)
               

               
               22-564, gnl|Mm7|chr1 (74153047-74152480)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-564, gnl|bosTau2|chr2 (63348642-63348096)
               

               
               22-564, gnl|Hg17|chr2 (218490608-218490021)
               

               
               22-564, gnl|Mm7|chr1 (74153047-74152480)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               cki (0.826173)
               

               
               sto (0.719295)
               

               
               che (0.545256)
               

               
               bfe (0.299715)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.826173)
               

               
               sto (0.719295)
               

               
               che (0.545256)
               

               
               bfe (0.299715)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

	22-564, gnl\|bosTau2\|chr2 (63348642-63348096)
	22-564, gnl\|Hg17\|chr2 (218490608-218490021)
	22-564, gnl\|Mm7\|chr1 (74153047-74152480)

	cki (0.826173)
	sto (0.719295)
	che (0.545256)
	bfe (0.299715)
	aor (0.195274)
	cmu (0.186393)
	cag (0.151194)
	isp (0.150376)
	csk (0.140746)
	cst (0.140036)
	hlv (0.139256)
	nca (0.136874)
	cov (0.132153)
	kid (0.129735)
	cbr (0.127975)
	bla (0.124347)
	jca (0.11396)