Non-Coding RNA Search

Ss1.1-rcli08b_j21.5

Sequence:


               
               TCAGAGACCTGGGCTCCGTGCCCCCAGAGCTGACGGCCAGCCGCCAAAGCTTCCACATGG
CCATGGGCAACCCCAGTGAGTTCTTTGTGGATGTTATGTAGGGCCCCAGGTGGGGCGGGG
TTCGATCTCCGGCCTGGACCTGGCCGGCCTCGGTGCTCCCTCCTGTGATTGGGTGTCTTG
TGGGTCGTGTGTGCTCGGTACTCCTCTGGTGCCCGGGCTCAGCCCGGTCCTGCGGGCTGC
CGCCTGCTGGGAGGCTGCTGCCACTGTGACTCTACCAGCAGTGCCTGGTTCCTCCCCTTC
CCTCAGGGGGCAGCAGGGACATTTGGTTATTTTTAGCTTTAATGTTTTTTGTAAGCCTTT
TGGGGGGCTGAAATAGACTTTCTTACATTTTTGGACTATTTTTTTAGTAGACATCTTCTC
TTTTATATGAAGAATTTGTACCTCCTCTTAGGCCCCTTCTTCTAAGCCCAAAATGTGACC
TCCTACTCCGTGCACCCCGTCAGTGGTCCCGCGCAGGGTGGGGGGGGCGGTCAGCGGTAC
CCTGGGAACTGGAAGGGGCTCTGTTACCCTAGACAGCAGAGGAAGCTGGGGTATTGGGTA
TTTGGGGGCCGTGTAGCTGCTTTTGTTAACTTTATTTATTTTAGTCATTTGTATAAAACA
CCAAATAAAGCAATAGGGGAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGAGACCTGGGCTCCGTGCCCCCAGAGCTGACGGCCAGCCGCCAAAGCTTCCACATGG
CCATGGGCAACCCCAGTGAGTTCTTTGTGGATGTTATGTAGGGCCCCAGGTGGGGCGGGG
TTCGATCTCCGGCCTGGACCTGGCCGGCCTCGGTGCTCCCTCCTGTGATTGGGTGTCTTG
TGGGTCGTGTGTGCTCGGTACTCCTCTGGTGCCCGGGCTCAGCCCGGTCCTGCGGGCTGC
CGCCTGCTGGGAGGCTGCTGCCACTGTGACTCTACCAGCAGTGCCTGGTTCCTCCCCTTC
CCTCAGGGGGCAGCAGGGACATTTGGTTATTTTTAGCTTTAATGTTTTTTGTAAGCCTTT
TGGGGGGCTGAAATAGACTTTCTTACATTTTTGGACTATTTTTTTAGTAGACATCTTCTC
TTTTATATGAAGAATTTGTACCTCCTCTTAGGCCCCTTCTTCTAAGCCCAAAATGTGACC
TCCTACTCCGTGCACCCCGTCAGTGGTCCCGCGCAGGGTGGGGGGGGCGGTCAGCGGTAC
CCTGGGAACTGGAAGGGGCTCTGTTACCCTAGACAGCAGAGGAAGCTGGGGTATTGGGTA
TTTGGGGGCCGTGTAGCTGCTTTTGTTAACTTTATTTATTTTAGTCATTTGTATAAAACA
CCAAATAAAGCAATAGGGGAAAAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               199-472, - strand, RNAz p=0.91766

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-472, - strand, RNAz p=0.91766

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-684, gnl|bosTau2|chr19 (20483491-20482819)
               

               
               1-684, gnl|canFam2|chr5 (35190839-35191377)
               

               
               1-684, gnl|echTel1|scaffold_306143 (1753-1214)
               

               
               1-684, gnl|hg17|chr17 (7069303-7069833)
               

               
               1-684, gnl|Hg17|chr17 (7070008-7069387)
               

               
               1-684, gnl|mm7|chr11 (70091770-70091234)
               

               
               1-684, gnl|Mm7|chr11 (70091066-70091686)
               

               
               1-684, gnl|monDom2|scaffold_66 (4112865-4113381)
               

               
               1-684, gnl|oryCun1|scaffold_188687 (3340-2789)
               

               
               1-684, gnl|panTro1|chr19_random (44684091-44683561)
               

               
               1-684, gnl|rheMac2|chr16 (6954678-6955206)
               

               
               1-684, gnl|rn3|chr10 (56869860-56869331)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr19 (20483491-20482819)
               

               
               1-684, gnl|canFam2|chr5 (35190839-35191377)
               

               
               1-684, gnl|echTel1|scaffold_306143 (1753-1214)
               

               
               1-684, gnl|hg17|chr17 (7069303-7069833)
               

               
               1-684, gnl|Hg17|chr17 (7070008-7069387)
               

               
               1-684, gnl|mm7|chr11 (70091770-70091234)
               

               
               1-684, gnl|Mm7|chr11 (70091066-70091686)
               

               
               1-684, gnl|monDom2|scaffold_66 (4112865-4113381)
               

               
               1-684, gnl|oryCun1|scaffold_188687 (3340-2789)
               

               
               1-684, gnl|panTro1|chr19_random (44684091-44683561)
               

               
               1-684, gnl|rheMac2|chr16 (6954678-6955206)
               

               
               1-684, gnl|rn3|chr10 (56869860-56869331)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ese (0.253004)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               cov (0.132153)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.253004)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               cov (0.132153)

	1-684, gnl\|bosTau2\|chr19 (20483491-20482819)
	1-684, gnl\|canFam2\|chr5 (35190839-35191377)
	1-684, gnl\|echTel1\|scaffold_306143 (1753-1214)
	1-684, gnl\|hg17\|chr17 (7069303-7069833)
	1-684, gnl\|Hg17\|chr17 (7070008-7069387)
	1-684, gnl\|mm7\|chr11 (70091770-70091234)
	1-684, gnl\|Mm7\|chr11 (70091066-70091686)
	1-684, gnl\|monDom2\|scaffold_66 (4112865-4113381)
	1-684, gnl\|oryCun1\|scaffold_188687 (3340-2789)
	1-684, gnl\|panTro1\|chr19_random (44684091-44683561)
	1-684, gnl\|rheMac2\|chr16 (6954678-6955206)
	1-684, gnl\|rn3\|chr10 (56869860-56869331)