Ss1.1-rcli09b_h21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGAAATCTCTCACCGCCTCAACTGCTCTCGGGAGGAGCGTCGCCCCCGCGGGTGTGCAG ACGGGCAGCGGCTGCCGGCCTCGGCCCCAGTCCTTCTACAGCACTTCCCGCTTTACCGGA GAAGCGACACCAACTGCTCCGGGGAGGACGCCGCGCCCCCCAATGAGAAGGACATCCCCT TCAGGGAGCGGTATGATGTGCTGTCCCGGGAGGCCTCGCAGAAGCTGCTGTGGTGGTTCC GGCCGCGCCTGGTCCTGAGTGGCCACACGCACAGCGCCTGTGAGGTCCTGCACGGGGCCA GCGTCCTCGAGGTCAGCGTCCCATCTTTCAGTTGGAGAAACAGAAACAACCCCAGTTTCA TCATGGGCAGCCTGACGCCCACGGAGTACGCCCTCACCAAGTGCTACCTGCCCTGTGAGG ACACAGTGCTGATCACATACTGTGTGGCGGTGGGGACCCTCGTGCTCCTCACCCTCCTCC ATGTGGGGCTCCTGACCTCGCCCTTGCGTTTCGGTTGGAACCTGCTCAGGAAGTTTAAGA CTACGTGAGCAGCAGGGGCTTGCTGCACTTCGTGATGGAGCCAAAGGAACTGGACCTGGG CTGTACCCATGGAGGGGAGACCTCAGGAGTGCGAGTGGGGACCACTCAGGGTCCTGCAGA GCCAGTGGCTGATGCGTTGTTCTCGTGCCGTAGCAACGCAACCTGTCCTGTACAATGAGC CTGTCTTTTATCACATACACGTGCGGTCAGCGACTGAGTGTACAGCATGTGACAGCTGTG AGCATGTCACTTCATGCACTGACAGCCCTCCTTCCCTGCGGCCCAGCCGGAAACACTGAT TTGCTTCTGTCCTCCTGTGAGCGCTTCTCAGAGCCTATGTTGTATAAATATGTATACTAA AAATAAAACTACAGATGCTACGAGCAGAAATATATTGTTCTCAGAGACTTGTATTTCTCA CTAAATTAATGGAATCGGCGTTTAGGTAAATGTAATTTTCCCTCTAGCCGACCAAGCTGT TAAATGTGAATTGAATGTCAGTGATCAAAAGAAACTTGAGAAATGGACCAGGAAGAGGCT TTTGGTATTTTAAAATAAACATGCCTTGGCAATTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGAAATCTCTCACCGCCTCAACTGCTCTCGGGAGGAGCGTCGCCCCCGCGGGTGTGCAG ACGGGCAGCGGCTGCCGGCCTCGGCCCCAGTCCTTCTACAGCACTTCCCGCTTTACCGGA GAAGCGACACCAACTGCTCCGGGGAGGACGCCGCGCCCCCCAATGAGAAGGACATCCCCT TCAGGGAGCGGTATGATGTGCTGTCCCGGGAGGCCTCGCAGAAGCTGCTGTGGTGGTTCC GGCCGCGCCTGGTCCTGAGTGGCCACACGCACAGCGCCTGTGAGGTCCTGCACGGGGCCA GCGTCCTCGAGGTCAGCGTCCCATCTTTCAGTTGGAGAAACAGAAACAACCCCAGTTTCA TCATGGGCAGCCTGACGCCCACGGAGTACGCCCTCACCAAGTGCTACCTGCCCTGTGAGG ACACAGTGCTGATCACATACTGTGTGGCGGTGGGGACCCTCGTGCTCCTCACCCTCCTCC ATGTGGGGCTCCTGACCTCGCCCTTGCGTTTCGGTTGGAACCTGCTCAGGAAGTTTAAGA CTACGTGAGCAGCAGGGGCTTGCTGCACTTCGTGATGGAGCCAAAGGAACTGGACCTGGG CTGTACCCATGGAGGGGAGACCTCAGGAGTGCGAGTGGGGACCACTCAGGGTCCTGCAGA GCCAGTGGCTGATGCGTTGTTCTCGTGCCGTAGCAACGCAACCTGTCCTGTACAATGAGC CTGTCTTTTATCACATACACGTGCGGTCAGCGACTGAGTGTACAGCATGTGACAGCTGTG AGCATGTCACTTCATGCACTGACAGCCCTCCTTCCCTGCGGCCCAGCCGGAAACACTGAT TTGCTTCTGTCCTCCTGTGAGCGCTTCTCAGAGCCTATGTTGTATAAATATGTATACTAA AAATAAAACTACAGATGCTACGAGCAGAAATATATTGTTCTCAGAGACTTGTATTTCTCA CTAAATTAATGGAATCGGCGTTTAGGTAAATGTAATTTTCCCTCTAGCCGACCAAGCTGT TAAATGTGAATTGAATGTCAGTGATCAAAAGAAACTTGAGAAATGGACCAGGAAGAGGCT TTTGGTATTTTAAAATAAACATGCCTTGGCAATTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 223-366, gnl|bosTau2|chr24 (31660458-31660315) | |
| 223-366, gnl|canFam2|chr7 (80567359-80567508) | |
| 223-366, gnl|danRer3|chr24 (8546040-8545885) | |
| 223-366, gnl|dasNov1|scaffold_101359 (152-4) | |
| 223-366, gnl|fr1|chrUn (131934374-131934241) | |
| 223-366, gnl|galGal2|chr2 (96296865-96296996) | |
| 223-366, gnl|hg17|chr18 (11875633-11875780) | |
| 223-366, gnl|Hg17|chr18 (11875817-11875674) | |
| 223-366, gnl|loxAfr1|scaffold_42233 (9756-9903) | |
| 223-366, gnl|mm7|chr18 (67619025-67619183) | |
| 223-366, gnl|Mm7|chr18 (67619219-67619077) | |
| 223-366, gnl|monDom2|scaffold_21 (19987868-19987720) | |
| 223-366, gnl|oryCun1|scaffold_124331 (2500-2646) | |
| 223-366, gnl|panTro1|chr17 (1702461-1702608) | |
| 223-366, gnl|rheMac2|chr18 (3778023-3778171) | |
| 223-366, gnl|rn3|chr18 (63813032-63813181) | |
| 223-366, gnl|tetNig1|chr15_random (1623095-1623203) | |
| 223-366, gnl|xenTro1|scaffold_202 (1732235-1732088) | |
| 846-1116, gnl|bosTau2|chr24 (31658870-31658610) | |
| 846-1116, gnl|canFam2|chr7 (80565355-80565726) | |
| 846-1116, gnl|dasNov1|scaffold_101359 (2201-1847) | |
| 846-1116, gnl|echTel1|scaffold_284324 (41653-41289) | |
| 846-1116, gnl|hg17|chr18 (11873275-11873647) | |
| 846-1116, gnl|Hg17|chr18 (11874059-11873483) | |
| 846-1116, gnl|loxAfr1|scaffold_49789 (473-65) | |
| 846-1116, gnl|mm7|chr18 (67617060-67617511) | |
| 846-1116, gnl|monDom2|scaffold_21 (19990316-19989847) | |
| 846-1116, gnl|oryCun1|scaffold_124331 (547-793) | |
| 846-1116, gnl|panTro1|chr17 (1700099-1700471) | |
| 846-1116, gnl|rheMac2|chr18 (3775697-3776069) | |
| 846-1116, gnl|rn3|chr18 (63811030-63811515) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 223-366, gnl|bosTau2|chr24 (31660458-31660315) | |
| 223-366, gnl|canFam2|chr7 (80567359-80567508) | |
| 223-366, gnl|danRer3|chr24 (8546040-8545885) | |
| 223-366, gnl|dasNov1|scaffold_101359 (152-4) | |
| 223-366, gnl|fr1|chrUn (131934374-131934241) | |
| 223-366, gnl|galGal2|chr2 (96296865-96296996) | |
| 223-366, gnl|hg17|chr18 (11875633-11875780) | |
| 223-366, gnl|Hg17|chr18 (11875817-11875674) | |
| 223-366, gnl|loxAfr1|scaffold_42233 (9756-9903) | |
| 223-366, gnl|mm7|chr18 (67619025-67619183) | |
| 223-366, gnl|Mm7|chr18 (67619219-67619077) | |
| 223-366, gnl|monDom2|scaffold_21 (19987868-19987720) | |
| 223-366, gnl|oryCun1|scaffold_124331 (2500-2646) | |
| 223-366, gnl|panTro1|chr17 (1702461-1702608) | |
| 223-366, gnl|rheMac2|chr18 (3778023-3778171) | |
| 223-366, gnl|rn3|chr18 (63813032-63813181) | |
| 223-366, gnl|tetNig1|chr15_random (1623095-1623203) | |
| 223-366, gnl|xenTro1|scaffold_202 (1732235-1732088) | |
| 846-1116, gnl|bosTau2|chr24 (31658870-31658610) | |
| 846-1116, gnl|canFam2|chr7 (80565355-80565726) | |
| 846-1116, gnl|dasNov1|scaffold_101359 (2201-1847) | |
| 846-1116, gnl|echTel1|scaffold_284324 (41653-41289) | |
| 846-1116, gnl|hg17|chr18 (11873275-11873647) | |
| 846-1116, gnl|Hg17|chr18 (11874059-11873483) | |
| 846-1116, gnl|loxAfr1|scaffold_49789 (473-65) | |
| 846-1116, gnl|mm7|chr18 (67617060-67617511) | |
| 846-1116, gnl|monDom2|scaffold_21 (19990316-19989847) | |
| 846-1116, gnl|oryCun1|scaffold_124331 (547-793) | |
| 846-1116, gnl|panTro1|chr17 (1700099-1700471) | |
| 846-1116, gnl|rheMac2|chr18 (3775697-3776069) | |
| 846-1116, gnl|rn3|chr18 (63811030-63811515) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| rec (0.346141) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| cli (0.152812) | |
| lin (0.145603) | |
| eep (0.122564) | |
| pgl (0.118483) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (0.346141) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| cli (0.152812) | |
| lin (0.145603) | |
| eep (0.122564) | |
| pgl (0.118483) |