Non-Coding RNA Search

Ss1.1-rcli14b_f16.5

Sequence:


               
               GAAGCTCAGGTACCACATGCCAGCCCAACGACAGCCACCTTCATCCCAGCACCAGCTGCT
GACCCCAGCCACTCAGCCGGACTTTATGTGAGAAACAGCCAAGGGAGGTCCATGTGCCTC
TCTGATAGTAGGGAAGCTTGGCCAAGAGTTCCTTGGTGACTCCTGTCTTTGGGCATTGTG
GGCTGAACCAAATGTCGCTGACTTGTAAAGTCATACCACATACCTGGAGAGTCCTTATCC
TTAAGGTCATCTGGAATCGGACATATTAATGGAACAGGATGTGGTGACAATAGCAGGCCA
GGGCAATTCAGGGCAGAAAGCCTAGGAAGTGCATTAAAAAGGCAAAAAATGCCCTGTCTG
AATGTTTGAACTACTGGGAAAAGGAACTGGGGCAGAAAACAAGAGGAATGAACATGCAGA
AAATATTCACCACCTATAGACAGCTTTAGGAAGTCACCCTGGGAAGTCACACCTGAGGGC
AGGGCTGTGACCCAGTCTGGGGATGGGCAGGGTCACTGGCCTTAAAGTGGCTTTGCTGGG
CATTGCTTCAGGCAGAGTGAGACTAATACTGCCTGGAGGAAAGTAGAAGCATTCTTGGAG
AATTTTCCATTTGCCTTGTGTTTTCCATACCCCTCAACAATGGGCAGTCATGTTCCAAAA
ATGGGATTTCATTTCACAGACCGTTAAAACTGTCATTTTCATGAACAAAGGGGTTCTCTA
GGATGCTAAAGTTTGGAAGTAACTGTAGCTTTCTGCAGGAAAGAGTGAATTTCGAGAGCA
AGAGTAGCAGAGAATTTGATGTACTCTTAATGCTTTTCCCCTGGAAGAACATTTGGTTCC
ACCTTATTCTTCAGCATTTTACTTGACTCGTCAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCTCAGGTACCACATGCCAGCCCAACGACAGCCACCTTCATCCCAGCACCAGCTGCT
GACCCCAGCCACTCAGCCGGACTTTATGTGAGAAACAGCCAAGGGAGGTCCATGTGCCTC
TCTGATAGTAGGGAAGCTTGGCCAAGAGTTCCTTGGTGACTCCTGTCTTTGGGCATTGTG
GGCTGAACCAAATGTCGCTGACTTGTAAAGTCATACCACATACCTGGAGAGTCCTTATCC
TTAAGGTCATCTGGAATCGGACATATTAATGGAACAGGATGTGGTGACAATAGCAGGCCA
GGGCAATTCAGGGCAGAAAGCCTAGGAAGTGCATTAAAAAGGCAAAAAATGCCCTGTCTG
AATGTTTGAACTACTGGGAAAAGGAACTGGGGCAGAAAACAAGAGGAATGAACATGCAGA
AAATATTCACCACCTATAGACAGCTTTAGGAAGTCACCCTGGGAAGTCACACCTGAGGGC
AGGGCTGTGACCCAGTCTGGGGATGGGCAGGGTCACTGGCCTTAAAGTGGCTTTGCTGGG
CATTGCTTCAGGCAGAGTGAGACTAATACTGCCTGGAGGAAAGTAGAAGCATTCTTGGAG
AATTTTCCATTTGCCTTGTGTTTTCCATACCCCTCAACAATGGGCAGTCATGTTCCAAAA
ATGGGATTTCATTTCACAGACCGTTAAAACTGTCATTTTCATGAACAAAGGGGTTCTCTA
GGATGCTAAAGTTTGGAAGTAACTGTAGCTTTCTGCAGGAAAGAGTGAATTTCGAGAGCA
AGAGTAGCAGAGAATTTGATGTACTCTTAATGCTTTTCCCCTGGAAGAACATTTGGTTCC
ACCTTATTCTTCAGCATTTTACTTGACTCGTCAGTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-876, gnl|bosTau2|chr11 (7312850-7313707)
               

               
               1-876, gnl|Hg17|chr2 (102251623-102252766)
               

               
               1-876, gnl|Mm7|chr1 (40553120-40553929)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-876, gnl|bosTau2|chr11 (7312850-7313707)
               

               
               1-876, gnl|Hg17|chr2 (102251623-102252766)
               

               
               1-876, gnl|Mm7|chr1 (40553120-40553929)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               cli (0.152812)
               

               
               ute (0.132784)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)
               

               
               ute (0.132784)
               

               
               eru (0.120048)

	1-876, gnl\|bosTau2\|chr11 (7312850-7313707)
	1-876, gnl\|Hg17\|chr2 (102251623-102252766)
	1-876, gnl\|Mm7\|chr1 (40553120-40553929)