Non-Coding RNA Search

Ss1.1-rcli17b_a9.5

Sequence:


               
               ACAGAGCCCCCAGAAATGCTGTTCCTGGGAGGCAGGCCCTGGGCCCTGCCCTCCCTCTGC
TTCTGCATTCTGGTCCTGGCCTGTGTTGTGGCATGCCAGCAAGCTGTGTTGGAGGAATCC
CCCACCCCCTCGCCGGAGCCGAAGGCCAGTCATGCCTGGAGCCTGGTTCCGGGCAAGATG
AAGGAGTGGGTGCAGCCGCTGGTGACCAGGACCAGAGAAAGGTGGGAGTGGTTCTGGGGC
CCCGGGGCCTTCCAGGGCTTTGTGCAGACCTACTACGATGATCACTTGAGAGACCTGGGC
TCCCGCACCAAGGCCTGGATCCACAGCTCCAAGGACAGCCTCCTGAACAAGGCCCATAGC
CTGTGTCCCCAGCTTTTCTGCGGAAGCAGGGACTAGGTTTCAAGGGTTCACAGGCTTTGC
AATAAAGAAGTTCTCCTCCGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGAGCCCCCAGAAATGCTGTTCCTGGGAGGCAGGCCCTGGGCCCTGCCCTCCCTCTGC
TTCTGCATTCTGGTCCTGGCCTGTGTTGTGGCATGCCAGCAAGCTGTGTTGGAGGAATCC
CCCACCCCCTCGCCGGAGCCGAAGGCCAGTCATGCCTGGAGCCTGGTTCCGGGCAAGATG
AAGGAGTGGGTGCAGCCGCTGGTGACCAGGACCAGAGAAAGGTGGGAGTGGTTCTGGGGC
CCCGGGGCCTTCCAGGGCTTTGTGCAGACCTACTACGATGATCACTTGAGAGACCTGGGC
TCCCGCACCAAGGCCTGGATCCACAGCTCCAAGGACAGCCTCCTGAACAAGGCCCATAGC
CTGTGTCCCCAGCTTTTCTGCGGAAGCAGGGACTAGGTTTCAAGGGTTCACAGGCTTTGC
AATAAAGAAGTTCTCCTCCGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1185465|gb|AAC48513.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1185465|gb|AAC48513.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               236-442, gnl|bosTau2|chr18 (38861244-38861039)
               

               
               236-442, gnl|canFam2|chr1 (113398155-113397950)
               

               
               236-442, gnl|echTel1|scaffold_113063 (315-112)
               

               
               236-442, gnl|hg17|chr19 (50140209-50140414)
               

               
               236-442, gnl|Hg17|chr19 (50140236-50140591)
               

               
               236-442, gnl|loxAfr1|scaffold_87584 (2032-1829)
               

               
               236-442, gnl|mm7|chr7 (17360715-17360516)
               

               
               236-442, gnl|Mm7|chr7 (17360687-17360464)
               

               
               236-442, gnl|rn3|chr1 (79063710-79063511)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               236-442, gnl|bosTau2|chr18 (38861244-38861039)
               

               
               236-442, gnl|canFam2|chr1 (113398155-113397950)
               

               
               236-442, gnl|echTel1|scaffold_113063 (315-112)
               

               
               236-442, gnl|hg17|chr19 (50140209-50140414)
               

               
               236-442, gnl|Hg17|chr19 (50140236-50140591)
               

               
               236-442, gnl|loxAfr1|scaffold_87584 (2032-1829)
               

               
               236-442, gnl|mm7|chr7 (17360715-17360516)
               

               
               236-442, gnl|Mm7|chr7 (17360687-17360464)
               

               
               236-442, gnl|rn3|chr1 (79063710-79063511)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cli (2.90342)
               

               
               fli (0.202881)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (2.90342)
               

               
               fli (0.202881)

	236-442, gnl\|bosTau2\|chr18 (38861244-38861039)
	236-442, gnl\|canFam2\|chr1 (113398155-113397950)
	236-442, gnl\|echTel1\|scaffold_113063 (315-112)
	236-442, gnl\|hg17\|chr19 (50140209-50140414)
	236-442, gnl\|Hg17\|chr19 (50140236-50140591)
	236-442, gnl\|loxAfr1\|scaffold_87584 (2032-1829)
	236-442, gnl\|mm7\|chr7 (17360715-17360516)
	236-442, gnl\|Mm7\|chr7 (17360687-17360464)
	236-442, gnl\|rn3\|chr1 (79063710-79063511)