Ss1.1-rcli17b_o1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCCTGAACTTCGGCTCCGGGAATCTATCCTCAACCCCCCAGATAGAGGTCGAGGGCTTT GTGCTCTTGCCCAACTCCGTCAGGGAGCCTGTCTTCCGGCTTGGTATGGCCACTAATGTG TCCGCCGCGCTGACCTTCAATACCAGCAAGATCACTGGATTCCTAAAGCCGGGGAAGATA CAAGTGGAACTGAAAGAATCTAAAGTTGGAATATTCAATGTGGAGCTGTTGGAGGCGCTG CTCAATTACTACCTTCTCAACAACCTCTACCCCAAGGTCAATGATAAGTTGGCAGAAGGC TTCCCCCTCCCTCTGCTAAATTATATTCAGCTCCACGACCCTGTTCTCCAGATCCACAAG GACTTCCTGCTTTTGGGCACCAACATCCGGTACCTGAGAGTCTGAGGGCAGGGCCAAAAA GACAGGGCTTGGAGGCCACAGCTGGATGGGCAAGTCCCATCTCCAGATATGCAGCGTAGT CCTGGAGAGTCTGGGAGGATGAAGACTTTTCTGTCACCAGCTCTGGGGGCCTGGCCTCTG CCCCCACACTCCTCCTTTTCCGCAGAGGCACCCACACCCTCTTTGTCTCCAGACTTTACT CTCCAGCCAGAAGAGACCATCTTCCTACTGGCTGGTGTACTTTCTTGAAGGGCAGACCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCCTGAACTTCGGCTCCGGGAATCTATCCTCAACCCCCCAGATAGAGGTCGAGGGCTTT GTGCTCTTGCCCAACTCCGTCAGGGAGCCTGTCTTCCGGCTTGGTATGGCCACTAATGTG TCCGCCGCGCTGACCTTCAATACCAGCAAGATCACTGGATTCCTAAAGCCGGGGAAGATA CAAGTGGAACTGAAAGAATCTAAAGTTGGAATATTCAATGTGGAGCTGTTGGAGGCGCTG CTCAATTACTACCTTCTCAACAACCTCTACCCCAAGGTCAATGATAAGTTGGCAGAAGGC TTCCCCCTCCCTCTGCTAAATTATATTCAGCTCCACGACCCTGTTCTCCAGATCCACAAG GACTTCCTGCTTTTGGGCACCAACATCCGGTACCTGAGAGTCTGAGGGCAGGGCCAAAAA GACAGGGCTTGGAGGCCACAGCTGGATGGGCAAGTCCCATCTCCAGATATGCAGCGTAGT CCTGGAGAGTCTGGGAGGATGAAGACTTTTCTGTCACCAGCTCTGGGGGCCTGGCCTCTG CCCCCACACTCCTCCTTTTCCGCAGAGGCACCCACACCCTCTTTGTCTCCAGACTTTACT CTCCAGCCAGAAGAGACCATCTTCCTACTGGCTGGTGTACTTTCTTGAAGGGCAGACCCT |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 393-529, - strand, RNAz p=0.868941 | |
| 438-548, + strand, RNAz p=0.925326 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 393-529, - strand, RNAz p=0.868941 | |
| 438-548, + strand, RNAz p=0.925326 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_004139, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 3-109, gnl|bosTau2|chr13 (49480459-49480565) | |
| 3-109, gnl|canFam2|chr24 (29796994-29797207) | |
| 3-109, gnl|dasNov1|scaffold_13101 (42273-42482) | |
| 3-109, gnl|echTel1|scaffold_176632 (2937-2723) | |
| 3-109, gnl|hg17|chr20 (36431013-36431226) | |
| 3-109, gnl|Hg17|chr20 (36431115-36431221) | |
| 3-109, gnl|loxAfr1|scaffold_8812 (22296-22509) | |
| 3-109, gnl|mm7|chr2 (158065355-158065572) | |
| 3-109, gnl|Mm7|chr2 (158065461-158065567) | |
| 3-109, gnl|monDom2|scaffold_6 (909713-909503) | |
| 3-109, gnl|oryCun1|scaffold_92721 (4043-4256) | |
| 3-109, gnl|panTro1|chr21 (38813945-38814158) | |
| 3-109, gnl|rheMac2|chr10 (26083838-26083625) | |
| 3-109, gnl|rn3|chr3 (148941838-148942055) | |
| 359-655, gnl|bosTau2|chr13 (49488469-49488756) | |
| 359-655, gnl|canFam2|chr24 (29803747-29804052) | |
| 359-655, gnl|dasNov1|scaffold_13101 (48632-48882) | |
| 359-655, gnl|echTel1|scaffold_322855 (44469-44759) | |
| 359-655, gnl|hg17|chr20 (36438674-36438960) | |
| 359-655, gnl|Hg17|chr20 (36438679-36438978) | |
| 359-655, gnl|loxAfr1|scaffold_8812 (29605-29900) | |
| 359-655, gnl|mm7|chr2 (158072789-158073057) | |
| 359-655, gnl|Mm7|chr2 (158072794-158073114) | |
| 359-655, gnl|monDom2|scaffold_6 (900063-899775) | |
| 359-655, gnl|oryCun1|scaffold_92721 (9953-10218) | |
| 359-655, gnl|panTro1|chr21 (38821676-38821962) | |
| 359-655, gnl|rn3|chr3 (148948998-148949294) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-109, gnl|bosTau2|chr13 (49480459-49480565) | |
| 3-109, gnl|canFam2|chr24 (29796994-29797207) | |
| 3-109, gnl|dasNov1|scaffold_13101 (42273-42482) | |
| 3-109, gnl|echTel1|scaffold_176632 (2937-2723) | |
| 3-109, gnl|hg17|chr20 (36431013-36431226) | |
| 3-109, gnl|Hg17|chr20 (36431115-36431221) | |
| 3-109, gnl|loxAfr1|scaffold_8812 (22296-22509) | |
| 3-109, gnl|mm7|chr2 (158065355-158065572) | |
| 3-109, gnl|Mm7|chr2 (158065461-158065567) | |
| 3-109, gnl|monDom2|scaffold_6 (909713-909503) | |
| 3-109, gnl|oryCun1|scaffold_92721 (4043-4256) | |
| 3-109, gnl|panTro1|chr21 (38813945-38814158) | |
| 3-109, gnl|rheMac2|chr10 (26083838-26083625) | |
| 3-109, gnl|rn3|chr3 (148941838-148942055) | |
| 359-655, gnl|bosTau2|chr13 (49488469-49488756) | |
| 359-655, gnl|canFam2|chr24 (29803747-29804052) | |
| 359-655, gnl|dasNov1|scaffold_13101 (48632-48882) | |
| 359-655, gnl|echTel1|scaffold_322855 (44469-44759) | |
| 359-655, gnl|hg17|chr20 (36438674-36438960) | |
| 359-655, gnl|Hg17|chr20 (36438679-36438978) | |
| 359-655, gnl|loxAfr1|scaffold_8812 (29605-29900) | |
| 359-655, gnl|mm7|chr2 (158072789-158073057) | |
| 359-655, gnl|Mm7|chr2 (158072794-158073114) | |
| 359-655, gnl|monDom2|scaffold_6 (900063-899775) | |
| 359-655, gnl|oryCun1|scaffold_92721 (9953-10218) | |
| 359-655, gnl|panTro1|chr21 (38821676-38821962) | |
| 359-655, gnl|rn3|chr3 (148948998-148949294) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cga (1.39548) | |
| cli (0.611247) | |
| col (0.195008) | |
| cag (0.151194) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (1.39548) | |
| cli (0.611247) | |
| col (0.195008) | |
| cag (0.151194) |