Non-Coding RNA Search

Ss1.1-rcli18b_i7.5.5

Sequence:


               
               CAGGTGGCGGCTCTGGGTCCACTCAGTGCATCCCGCTCTGCGAGGCAGACATGAGGGCAG
AGGGAATGTCCCTCTTCCTGGCTCTGGGCCTCCTGGTGGCTGGGCTCTGCTCCAGGGTCC
ACTGCCTCCCAGCGGATGACCTTGCCTCAAAGATTGTGACCCTGAAGGGCCAGATCACGA
AGCTGCCAGCGCACAACACCGCCGTCGTCTCCAGCAACACCGACTTCGCCTTCAGCCTCT
ACAAGCAGCTGGTTTCTTTAGACCCCAGTAAGAACGTCATCTTCTCCCCGCTGAGCGTCT
CCATAGCCTTGGCCTTCCTGTCTCTGGGGGCCCAAGGCTCCACCCTGACAGAGCTCCTGG
AAGGCCTCAAGTTCAATGTCACAAAGACCCCCGAGGCAGAAATCCACCAGGGCTTCCAGC
ACCTCCTGCAGGCCCTCAGCCAACCCAGCAACCTGCTGCAGCTGAACGTGGGCAACGCCA
TGTTCGTGGATGAGCATCTGAAGCTGCTGGACAAGTTCGTCCAAGATGCCCGTGAGCTGT
ACTTCTCCGAGGCCTTCTCCATCAGCTTTAAGGACTCCGATGCTGCTGTACAGTTCATCA
ACAACTATGTAAAGAATAAGACCAAGGGGAAAATTGTGGATTTGTTCAAACAACTTTCCC
CGAATACAGTCCTGGTTCTGGTGAACTGCATCTACTTTAAAGCCAAGTGGAAGATGCCCT
TCAATCCCAACTTTACCACGGAGGCAGATTTCCACGTGAGCAAGAACAGGACGGTGAGGG
TGCCCATGATGGGCATTACGGGCCGCACCGTGCCTTACTTCCGGGACCAGGAGCTGGCCT
GCACGGTGGTGGAGCTCCCGTACACCAGCAACGACAGCGCCCTCTTCATCCTCCCTGACG
ACGGCAGGATGGCGGCCGTGGAAGCCAAGCTGCTCCCGGAGACACTGAGGAGGTGGAGAG
ACTCCCTGCACCTCAGACGGATAACTGCCCTCCACCTGCCACGGTTTTCCGTCTCCGGGG
ACTATAAGCTGCATGACATCCTTCCCCACCTGGGCATTAAGAAAGTCTTCAGCCACCAGG
CTGACCTGTCAGGAATCACAGATCAAGCGCGCCTGGAAGTTTCCCAGGTGGTCCACAGAG
CTGTGCTTGACGTGGACGAGGAGGGCACGGAAGGAGCTGCTGCCACGGGAATCAGCATAC
AACCCACATCCCTAGTGTTTTTGACGGTGAATTTCAACAGGCCCTTTCTCTTTTTCATAA
TTCACAAAGACACCCAGAGCATCCTCTTTTCAGGCAAAGTCACTAACCCCTCCCCTCCAA
GTGCCAGGTCTCCTCATTAAGGAGCTGGGTGCCCTGGTCCCTGGGGCATCCTGGCACTGC
CTGCTCACCCTTGGGAAGGTGACAGTCGCCCTCTGGAAGCTCCACATTCCCAGGGAGCCT
GCGCCCTGCTCCGCGGAGGCTCTGAGACCTCGCACAGCAATAAAGCATCTTTCTGAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGTGGCGGCTCTGGGTCCACTCAGTGCATCCCGCTCTGCGAGGCAGACATGAGGGCAG
AGGGAATGTCCCTCTTCCTGGCTCTGGGCCTCCTGGTGGCTGGGCTCTGCTCCAGGGTCC
ACTGCCTCCCAGCGGATGACCTTGCCTCAAAGATTGTGACCCTGAAGGGCCAGATCACGA
AGCTGCCAGCGCACAACACCGCCGTCGTCTCCAGCAACACCGACTTCGCCTTCAGCCTCT
ACAAGCAGCTGGTTTCTTTAGACCCCAGTAAGAACGTCATCTTCTCCCCGCTGAGCGTCT
CCATAGCCTTGGCCTTCCTGTCTCTGGGGGCCCAAGGCTCCACCCTGACAGAGCTCCTGG
AAGGCCTCAAGTTCAATGTCACAAAGACCCCCGAGGCAGAAATCCACCAGGGCTTCCAGC
ACCTCCTGCAGGCCCTCAGCCAACCCAGCAACCTGCTGCAGCTGAACGTGGGCAACGCCA
TGTTCGTGGATGAGCATCTGAAGCTGCTGGACAAGTTCGTCCAAGATGCCCGTGAGCTGT
ACTTCTCCGAGGCCTTCTCCATCAGCTTTAAGGACTCCGATGCTGCTGTACAGTTCATCA
ACAACTATGTAAAGAATAAGACCAAGGGGAAAATTGTGGATTTGTTCAAACAACTTTCCC
CGAATACAGTCCTGGTTCTGGTGAACTGCATCTACTTTAAAGCCAAGTGGAAGATGCCCT
TCAATCCCAACTTTACCACGGAGGCAGATTTCCACGTGAGCAAGAACAGGACGGTGAGGG
TGCCCATGATGGGCATTACGGGCCGCACCGTGCCTTACTTCCGGGACCAGGAGCTGGCCT
GCACGGTGGTGGAGCTCCCGTACACCAGCAACGACAGCGCCCTCTTCATCCTCCCTGACG
ACGGCAGGATGGCGGCCGTGGAAGCCAAGCTGCTCCCGGAGACACTGAGGAGGTGGAGAG
ACTCCCTGCACCTCAGACGGATAACTGCCCTCCACCTGCCACGGTTTTCCGTCTCCGGGG
ACTATAAGCTGCATGACATCCTTCCCCACCTGGGCATTAAGAAAGTCTTCAGCCACCAGG
CTGACCTGTCAGGAATCACAGATCAAGCGCGCCTGGAAGTTTCCCAGGTGGTCCACAGAG
CTGTGCTTGACGTGGACGAGGAGGGCACGGAAGGAGCTGCTGCCACGGGAATCAGCATAC
AACCCACATCCCTAGTGTTTTTGACGGTGAATTTCAACAGGCCCTTTCTCTTTTTCATAA
TTCACAAAGACACCCAGAGCATCCTCTTTTCAGGCAAAGTCACTAACCCCTCCCCTCCAA
GTGCCAGGTCTCCTCATTAAGGAGCTGGGTGCCCTGGTCCCTGGGGCATCCTGGCACTGC
CTGCTCACCCTTGGGAAGGTGACAGTCGCCCTCTGGAAGCTCCACATTCCCAGGGAGCCT
GCGCCCTGCTCCGCGGAGGCTCTGAGACCTCGCACAGCAATAAAGCATCTTTCTGAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47523270|ref|NP_998952.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47523270|ref|NP_998952.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               35-702, gnl|bosTau2|chr21 (40705409-40704769)
               

               
               35-702, gnl|Hg17|chr14 (94150510-94151174)
               

               
               35-702, gnl|Mm7|chr12 (101902962-101903629)
               


               
               1125-1494, gnl|bosTau2|chr21 (40671456-40671082)
               

               
               1125-1494, gnl|Hg17|chr14 (94159698-94160139)
               

               
               1125-1494, gnl|Mm7|chr12 (101907731-101908144)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-702, gnl|bosTau2|chr21 (40705409-40704769)
               

               
               35-702, gnl|Hg17|chr14 (94150510-94151174)
               

               
               35-702, gnl|Mm7|chr12 (101902962-101903629)
               


               
               1125-1494, gnl|bosTau2|chr21 (40671456-40671082)
               

               
               1125-1494, gnl|Hg17|chr14 (94159698-94160139)
               

               
               1125-1494, gnl|Mm7|chr12 (101907731-101908144)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cli (7.18215)
               

               
               cag (0.151194)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (7.18215)
               

               
               cag (0.151194)

	35-702, gnl\|bosTau2\|chr21 (40705409-40704769)
	35-702, gnl\|Hg17\|chr14 (94150510-94151174)
	35-702, gnl\|Mm7\|chr12 (101902962-101903629)

	1125-1494, gnl\|bosTau2\|chr21 (40671456-40671082)
	1125-1494, gnl\|Hg17\|chr14 (94159698-94160139)
	1125-1494, gnl\|Mm7\|chr12 (101907731-101908144)