Non-Coding RNA Search

Ss1.1-rcli20b_d14.5

Sequence:


               
               GCTGGAAAGTCCTCCCTGGCTGGGGGCCTGCTGCGGCTGCTGGAGGCTGCTGAGGGCGGG
ATCTGGATCGACGGGGTCCCCATCGCCCAGGTGGGACTGCACACACTGCGGTCCAGGATC
ACCATCATCCCCCAGGACCCCATCCTGTTCCCTGGTTCTCTGCGAATGAACCTTGACATG
CTGCAGGAGCACACGGATGAGGCCATCTGGGCAGCCTTGGAGACGGTGCAGCTCAGAGCC
GTGGTGGCCACCCTGCCTGGCCAGCTGCACTACGAGTGTGCCGACCAGGGCGACAACCTG
AGCGTGGGGCAGAAGCAGCTCCTGTGTCTGGCACGGGCTCTTCTCCGGAAAACCCAGATC
CTCATCCTGGACGAGGCCACGGCCGCCGTGGACCCAGGGACAGAGCGCCAGATGCAGGCC
GCCCTGAGCAGCTGGTTTGCACAGTGCACGGTACTGCTCATCGCCCACCGCCTGAGCTCC
GTGCTCGACTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGAAAGTCCTCCCTGGCTGGGGGCCTGCTGCGGCTGCTGGAGGCTGCTGAGGGCGGG
ATCTGGATCGACGGGGTCCCCATCGCCCAGGTGGGACTGCACACACTGCGGTCCAGGATC
ACCATCATCCCCCAGGACCCCATCCTGTTCCCTGGTTCTCTGCGAATGAACCTTGACATG
CTGCAGGAGCACACGGATGAGGCCATCTGGGCAGCCTTGGAGACGGTGCAGCTCAGAGCC
GTGGTGGCCACCCTGCCTGGCCAGCTGCACTACGAGTGTGCCGACCAGGGCGACAACCTG
AGCGTGGGGCAGAAGCAGCTCCTGTGTCTGGCACGGGCTCTTCTCCGGAAAACCCAGATC
CTCATCCTGGACGAGGCCACGGCCGCCGTGGACCCAGGGACAGAGCGCCAGATGCAGGCC
GCCCTGAGCAGCTGGTTTGCACAGTGCACGGTACTGCTCATCGCCCACCGCCTGAGCTCC
GTGCTCGACTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BV39_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BV39_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               191-309, + strand, RNAz p=0.709194

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               191-309, + strand, RNAz p=0.709194

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               89-309, gnl|bosTau2|chr25 (16443690-16443907)
               

               
               89-309, gnl|canFam2|chr6 (30875102-30874917)
               

               
               89-309, gnl|danRer3|chr3 (32436876-32437057)
               

               
               89-309, gnl|dasNov1|scaffold_7489 (3864-4045)
               

               
               89-309, gnl|echTel1|scaffold_105159 (1171-1354)
               

               
               89-309, gnl|fr1|chrUn (106281918-106282093)
               

               
               89-309, gnl|galGal2|chr14 (9745304-9745479)
               

               
               89-309, gnl|hg17|chr16 (16155981-16156166)
               

               
               89-309, gnl|Hg17|chr16 (16156197-16155980)
               

               
               89-309, gnl|loxAfr1|scaffold_12719 (77492-77317)
               

               
               89-309, gnl|mm7|chr16 (14028817-14029001)
               

               
               89-309, gnl|Mm7|chr7 (42156073-42155856)
               

               
               89-309, gnl|monDom2|scaffold_19 (36151739-36151924)
               

               
               89-309, gnl|oryCun1|scaffold_206345 (57805-57639)
               

               
               89-309, gnl|rheMac2|chr4 (64446557-64446372)
               

               
               89-309, gnl|rn3|chr1 (96530577-96530761)
               

               
               89-309, gnl|tetNig1|chr18 (4587423-4587600)
               

               
               89-309, gnl|xenTro1|scaffold_214 (216544-216360)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-309, gnl|bosTau2|chr25 (16443690-16443907)
               

               
               89-309, gnl|canFam2|chr6 (30875102-30874917)
               

               
               89-309, gnl|danRer3|chr3 (32436876-32437057)
               

               
               89-309, gnl|dasNov1|scaffold_7489 (3864-4045)
               

               
               89-309, gnl|echTel1|scaffold_105159 (1171-1354)
               

               
               89-309, gnl|fr1|chrUn (106281918-106282093)
               

               
               89-309, gnl|galGal2|chr14 (9745304-9745479)
               

               
               89-309, gnl|hg17|chr16 (16155981-16156166)
               

               
               89-309, gnl|Hg17|chr16 (16156197-16155980)
               

               
               89-309, gnl|loxAfr1|scaffold_12719 (77492-77317)
               

               
               89-309, gnl|mm7|chr16 (14028817-14029001)
               

               
               89-309, gnl|Mm7|chr7 (42156073-42155856)
               

               
               89-309, gnl|monDom2|scaffold_19 (36151739-36151924)
               

               
               89-309, gnl|oryCun1|scaffold_206345 (57805-57639)
               

               
               89-309, gnl|rheMac2|chr4 (64446557-64446372)
               

               
               89-309, gnl|rn3|chr1 (96530577-96530761)
               

               
               89-309, gnl|tetNig1|chr18 (4587423-4587600)
               

               
               89-309, gnl|xenTro1|scaffold_214 (216544-216360)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cli (0.152812)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)

	89-309, gnl\|bosTau2\|chr25 (16443690-16443907)
	89-309, gnl\|canFam2\|chr6 (30875102-30874917)
	89-309, gnl\|danRer3\|chr3 (32436876-32437057)
	89-309, gnl\|dasNov1\|scaffold_7489 (3864-4045)
	89-309, gnl\|echTel1\|scaffold_105159 (1171-1354)
	89-309, gnl\|fr1\|chrUn (106281918-106282093)
	89-309, gnl\|galGal2\|chr14 (9745304-9745479)
	89-309, gnl\|hg17\|chr16 (16155981-16156166)
	89-309, gnl\|Hg17\|chr16 (16156197-16155980)
	89-309, gnl\|loxAfr1\|scaffold_12719 (77492-77317)
	89-309, gnl\|mm7\|chr16 (14028817-14029001)
	89-309, gnl\|Mm7\|chr7 (42156073-42155856)
	89-309, gnl\|monDom2\|scaffold_19 (36151739-36151924)
	89-309, gnl\|oryCun1\|scaffold_206345 (57805-57639)
	89-309, gnl\|rheMac2\|chr4 (64446557-64446372)
	89-309, gnl\|rn3\|chr1 (96530577-96530761)
	89-309, gnl\|tetNig1\|chr18 (4587423-4587600)
	89-309, gnl\|xenTro1\|scaffold_214 (216544-216360)