Ss1.1-rcli22b_h23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAAGTTCCACGTGCCCTGCCCACTGGCTCCCAGTTTAGCCAACATTACAGGCAACTTC AGCCTCATGGAGGTTGTCAAGGAACAGGCCCAGCTGCAGGTCGAGACGGAGGTCACAGCC TTCTGCACCCCGAACTACTTCACACTCAACACACAGACGGCATACACCATCCCCATCATG GCCTTCGCCTTCGTCTGCCACCCCGAGGTGCTGCCCATCTATACAGAGCTCAAGGACCCC TCCAAGCGGAAGATGCAGCACATCTCCAACCTGTCCATCGCCGTCATGTATGTCATGTAC TTCCTGGCCGCCCTCTTCGGCTACCTCACCTTCTACGATGGGGTGGAGTCAGAGCTGCTG CACACCTACAGCAAGGTGGACCCATTTGATGTGCTGATCCTGTGTGTGCGTGTGGCTGTG CTGACAGCAGTCACTCTCACGGTGCCCATCGTTCTGTTTCCGGTACGCCGCGCCCTCCAG CAGATGCTGTTTCAGGACCAGGAGTTCAGCTGGCTTCGGCATGTGCTCATTGCTATTAGC CTGCTCACTTGTATCAACCTGCTGGTCATCTTTGCCCCCAACATTCTGGGCATCTTTGGA GTCATCGGTGCCACGTCTGCCCCATGCCTCATCTTCATCTTCCCTGCCATCTTCTATTTT CGCATCATGCCCATCGAGAAGGAACCTGCAAAGTCTACCCCCAAAATCCTGGCCCTTTGT TTTGCTGCAGTTGGTCTCTTGCTGATGACCATGAGCTTGAGCTTCATCATTATTGACTGG GTCTCGGGGACAAGCCAGCACGGAGGAAGCCACTAGGATGAACCCCCCCATCCTGTTCTG TATCCCTGCCCAGACTCTTCATCCTGTGGCCAGCTGAGGGAGGAGAAAGATGTGGTGAAT ACTATGGCATTTGGCCCTGCCCCACGTCCTCTCTGTTGTAGTTTTTGTTAGAGCCAGGAC CAAGGCCCTTGGGCCACTACCCTGCTGGGCTCCTGGGCCGCAGGGACTTCCTGAGCCGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAAGTTCCACGTGCCCTGCCCACTGGCTCCCAGTTTAGCCAACATTACAGGCAACTTC AGCCTCATGGAGGTTGTCAAGGAACAGGCCCAGCTGCAGGTCGAGACGGAGGTCACAGCC TTCTGCACCCCGAACTACTTCACACTCAACACACAGACGGCATACACCATCCCCATCATG GCCTTCGCCTTCGTCTGCCACCCCGAGGTGCTGCCCATCTATACAGAGCTCAAGGACCCC TCCAAGCGGAAGATGCAGCACATCTCCAACCTGTCCATCGCCGTCATGTATGTCATGTAC TTCCTGGCCGCCCTCTTCGGCTACCTCACCTTCTACGATGGGGTGGAGTCAGAGCTGCTG CACACCTACAGCAAGGTGGACCCATTTGATGTGCTGATCCTGTGTGTGCGTGTGGCTGTG CTGACAGCAGTCACTCTCACGGTGCCCATCGTTCTGTTTCCGGTACGCCGCGCCCTCCAG CAGATGCTGTTTCAGGACCAGGAGTTCAGCTGGCTTCGGCATGTGCTCATTGCTATTAGC CTGCTCACTTGTATCAACCTGCTGGTCATCTTTGCCCCCAACATTCTGGGCATCTTTGGA GTCATCGGTGCCACGTCTGCCCCATGCCTCATCTTCATCTTCCCTGCCATCTTCTATTTT CGCATCATGCCCATCGAGAAGGAACCTGCAAAGTCTACCCCCAAAATCCTGGCCCTTTGT TTTGCTGCAGTTGGTCTCTTGCTGATGACCATGAGCTTGAGCTTCATCATTATTGACTGG GTCTCGGGGACAAGCCAGCACGGAGGAAGCCACTAGGATGAACCCCCCCATCCTGTTCTG TATCCCTGCCCAGACTCTTCATCCTGTGGCCAGCTGAGGGAGGAGAAAGATGTGGTGAAT ACTATGGCATTTGGCCCTGCCCCACGTCCTCTCTGTTGTAGTTTTTGTTAGAGCCAGGAC CAAGGCCCTTGGGCCACTACCCTGCTGGGCTCCTGGGCCGCAGGGACTTCCTGAGCCGGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-156, gnl|bosTau2|chr22 (38463369-38463524) | |
| 1-156, gnl|Hg17|chr3 (50230121-50230276) | |
| 1-156, gnl|Mm7|chr9 (107385708-107385547) | |
| 237-347, gnl|bosTau2|chr22 (38463963-38464074) | |
| 237-347, gnl|canFam2|chr20 (42111119-42111009) | |
| 237-347, gnl|danRer3|chr19 (17049740-17049850) | |
| 237-347, gnl|dasNov1|scaffold_4295 (42882-42992) | |
| 237-347, gnl|echTel1|scaffold_260053 (2036-2141) | |
| 237-347, gnl|fr1|chrUn (216870039-216870171) | |
| 237-347, gnl|hg17|chr3 (50230702-50230812) | |
| 237-347, gnl|Hg17|chr3 (50230706-50230817) | |
| 237-347, gnl|loxAfr1|scaffold_6646 (83933-84041) | |
| 237-347, gnl|mm7|chr9 (107385138-107385028) | |
| 237-347, gnl|Mm7|chr9 (107385132-107385021) | |
| 237-347, gnl|monDom2|scaffold_5 (74239284-74239174) | |
| 237-347, gnl|oryCun1|scaffold_210732 (39485-39375) | |
| 237-347, gnl|panTro1|chr2 (51810274-51810384) | |
| 237-347, gnl|rheMac2|chr2 (86202048-86201938) | |
| 237-347, gnl|rn3|chr8 (112921527-112921417) | |
| 237-347, gnl|tetNig1|chr11 (4767615-4767517) | |
| 237-347, gnl|xenTro1|scaffold_189 (585035-585141) | |
| 462-623, gnl|bosTau2|chr22 (38464519-38464680) | |
| 462-623, gnl|Hg17|chr3 (50231239-50231399) | |
| 462-623, gnl|Mm7|chr9 (107384615-107384455) | |
| 711-1020, gnl|bosTau2|chr22 (38465950-38466262) | |
| 711-1020, gnl|Hg17|chr3 (50232508-50232844) | |
| 711-1020, gnl|Mm7|chr9 (107381486-107381138) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-156, gnl|bosTau2|chr22 (38463369-38463524) | |
| 1-156, gnl|Hg17|chr3 (50230121-50230276) | |
| 1-156, gnl|Mm7|chr9 (107385708-107385547) | |
| 237-347, gnl|bosTau2|chr22 (38463963-38464074) | |
| 237-347, gnl|canFam2|chr20 (42111119-42111009) | |
| 237-347, gnl|danRer3|chr19 (17049740-17049850) | |
| 237-347, gnl|dasNov1|scaffold_4295 (42882-42992) | |
| 237-347, gnl|echTel1|scaffold_260053 (2036-2141) | |
| 237-347, gnl|fr1|chrUn (216870039-216870171) | |
| 237-347, gnl|hg17|chr3 (50230702-50230812) | |
| 237-347, gnl|Hg17|chr3 (50230706-50230817) | |
| 237-347, gnl|loxAfr1|scaffold_6646 (83933-84041) | |
| 237-347, gnl|mm7|chr9 (107385138-107385028) | |
| 237-347, gnl|Mm7|chr9 (107385132-107385021) | |
| 237-347, gnl|monDom2|scaffold_5 (74239284-74239174) | |
| 237-347, gnl|oryCun1|scaffold_210732 (39485-39375) | |
| 237-347, gnl|panTro1|chr2 (51810274-51810384) | |
| 237-347, gnl|rheMac2|chr2 (86202048-86201938) | |
| 237-347, gnl|rn3|chr8 (112921527-112921417) | |
| 237-347, gnl|tetNig1|chr11 (4767615-4767517) | |
| 237-347, gnl|xenTro1|scaffold_189 (585035-585141) | |
| 462-623, gnl|bosTau2|chr22 (38464519-38464680) | |
| 462-623, gnl|Hg17|chr3 (50231239-50231399) | |
| 462-623, gnl|Mm7|chr9 (107384615-107384455) | |
| 711-1020, gnl|bosTau2|chr22 (38465950-38466262) | |
| 711-1020, gnl|Hg17|chr3 (50232508-50232844) | |
| 711-1020, gnl|Mm7|chr9 (107381486-107381138) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.458435) |