Ss1.1-rcli22b_m2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATGAGCCGTGGGGCTAGACTGTTGCCTCCCCCTCCTCCCCTCCCCTCAAAGTGTGTTGG TTTGTATTTTGACAGAGGATAAAGCTATTTTACCCTCGTGCCGAATTCGGCACGAGGGGC TGCTGATGCTGAAGCCGAGCGTCCCTCCGGCTCCCACGGCAGACATGGCGACATTGACAG TGGTCCAGCCGCTCACTCTGGACAGAGATGTTGCCAGAGCAATTGAATTACTGGAAAAAC TACAGGAATCTGGAGAAGTACCAGTGCACAAGCTACAATCCCTCAAAAAAGTGCTTCAGA GTGAGTTTTGTACTGCTATTCGAGAGGTGTATCAATATATGCATGAAACGATAACTGTTA ATGGCTGTCCCGAATTCCGTGCCAGGGCCACAGCAAAGGCAACAGTTGCAGCTTTTGCAG CTAGTGAAGGCCACTCCCACCCTCGGGTGGTCGAACTGCCCAAGACGGATGAAGGCCTTG GTTTTAACGTGATGGGAGGAAAGGAGCAAAATTCCCCCATTTATATCTCTCGCATCATTC CCGGAGGGGTGGCTGAAAGACACGGAGGCCTCAAGCGAGGAGACCAGCTGCTGTCAGTGA ACGGAGTGAGTGTGGAAGGGGAACACCATGAGAAAGCCGTGGAACTCCTCAAGGCTGCTA AGGACAGTGTCAAGCTGGTGGTCCGATACACCCCAAAAGTCTTGGAAGAAATGGAGGCTC GATTTGAAAAGCTCCGGACAGCGCGGCGTCGGCAGCAGCAGCAATTGCTAATTCAGCAGC AGCAACAGCAGCAGCAGCAACAAACACAGCAAAACCATATGTCATAGATTAGTATTCGCA CAACCAGAAACACTGAATATGAGAAGATATTTGCAATTATTTGTGATGCTCATGAAAAGG AGAATCTACATGGGGAAGGAAAAAGAAGATGAGTCCTCAGAGTCCTGGAAATTCAGCGCT CTGTCTTCTTTTCATAGCTTCCTAGTTTTACTCTATATACCACAGTTTGGTGTCTTTATC TAAAATTACATTTCATCCTGAAAACTACTTTTTTTTCAACAGTAAATATGTATTGTTCCT ATGCTGTTCCAGGCACAGTTCAATGGGCTGTAGAAACATCGTGAGCAAAGCAAAGTCCTT TGCTCTCCTGATGTTTACACTCTGGTTGGCGGAGAGAGCCAATTAACAAGTAGATTAAAA ACATCTGACTGAGACTAGTACTTTGTCTCGTTAGAA------------------------ ------------------------------------------------------------ ------------------------------------------------AAAAAAAAAAAA AACCTTACAATAGTGTGCTTATATAGAGACTGGTGAGGTGATGGCTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATGAGCCGTGGGGCTAGACTGTTGCCTCCCCCTCCTCCCCTCCCCTCAAAGTGTGTTGG TTTGTATTTTGACAGAGGATAAAGCTATTTTACCCTCGTGCCGAATTCGGCACGAGGGGC TGCTGATGCTGAAGCCGAGCGTCCCTCCGGCTCCCACGGCAGACATGGCGACATTGACAG TGGTCCAGCCGCTCACTCTGGACAGAGATGTTGCCAGAGCAATTGAATTACTGGAAAAAC TACAGGAATCTGGAGAAGTACCAGTGCACAAGCTACAATCCCTCAAAAAAGTGCTTCAGA GTGAGTTTTGTACTGCTATTCGAGAGGTGTATCAATATATGCATGAAACGATAACTGTTA ATGGCTGTCCCGAATTCCGTGCCAGGGCCACAGCAAAGGCAACAGTTGCAGCTTTTGCAG CTAGTGAAGGCCACTCCCACCCTCGGGTGGTCGAACTGCCCAAGACGGATGAAGGCCTTG GTTTTAACGTGATGGGAGGAAAGGAGCAAAATTCCCCCATTTATATCTCTCGCATCATTC CCGGAGGGGTGGCTGAAAGACACGGAGGCCTCAAGCGAGGAGACCAGCTGCTGTCAGTGA ACGGAGTGAGTGTGGAAGGGGAACACCATGAGAAAGCCGTGGAACTCCTCAAGGCTGCTA AGGACAGTGTCAAGCTGGTGGTCCGATACACCCCAAAAGTCTTGGAAGAAATGGAGGCTC GATTTGAAAAGCTCCGGACAGCGCGGCGTCGGCAGCAGCAGCAATTGCTAATTCAGCAGC AGCAACAGCAGCAGCAGCAACAAACACAGCAAAACCATATGTCATAGATTAGTATTCGCA CAACCAGAAACACTGAATATGAGAAGATATTTGCAATTATTTGTGATGCTCATGAAAAGG AGAATCTACATGGGGAAGGAAAAAGAAGATGAGTCCTCAGAGTCCTGGAAATTCAGCGCT CTGTCTTCTTTTCATAGCTTCCTAGTTTTACTCTATATACCACAGTTTGGTGTCTTTATC TAAAATTACATTTCATCCTGAAAACTACTTTTTTTTCAACAGTAAATATGTATTGTTCCT ATGCTGTTCCAGGCACAGTTCAATGGGCTGTAGAAACATCGTGAGCAAAGCAAAGTCCTT TGCTCTCCTGATGTTTACACTCTGGTTGGCGGAGAGAGCCAATTAACAAGTAGATTAAAA ACATCTGACTGAGACTAGTACTTTGTCTCGTTAGAA------------------------ ------------------------------------------------------------ ------------------------------------------------AAAAAAAAAAAA AACCTTACAATAGTGTGCTTATATAGAGACTGGTGAGGTGATGGCTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-94, gnl|bosTau2|chr18 (48399486-48399387) | |
| 1-94, gnl|Hg17|chr19 (54535753-54535669) | |
| 1-94, gnl|Mm7|chr7 (41409266-41409347) | |
| 397-608, gnl|bosTau2|chr15 (36477412-36477623) | |
| 397-608, gnl|canFam2|chr21 (51260108-51260336) | |
| 397-608, gnl|danRer3|chr7 (22057473-22057698) | |
| 397-608, gnl|dasNov1|scaffold_4617 (11882-12110) | |
| 397-608, gnl|echTel1|scaffold_318695 (137880-137652) | |
| 397-608, gnl|fr1|chrUn (226350008-226350231) | |
| 397-608, gnl|galGal2|chr3 (44811937-44811711) | |
| 397-608, gnl|hg17|chr11 (27477476-27477704) | |
| 397-608, gnl|Hg17|chr11 (27477693-27477482) | |
| 397-608, gnl|loxAfr1|scaffold_40076 (1972-2200) | |
| 397-608, gnl|mm7|chr2 (109747240-109747012) | |
| 397-608, gnl|Mm7|chr2 (109747021-109747232) | |
| 397-608, gnl|monDom2|scaffold_10 (72905701-72905939) | |
| 397-608, gnl|oryCun1|scaffold_212415 (53267-53039) | |
| 397-608, gnl|panTro1|chr9 (27775319-27775547) | |
| 397-608, gnl|rheMac2|chr14 (44305547-44305319) | |
| 397-608, gnl|rn3|chr3 (95230912-95230684) | |
| 397-608, gnl|tetNig1|chrUn_random (102073122-102072897) | |
| 397-608, gnl|xenTro1|scaffold_4 (1312470-1312702) | |
| 826-1226, gnl|bosTau2|chr5 (7900751-7901151) | |
| 826-1226, gnl|Hg17|chr12 (79705597-79704557) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-94, gnl|bosTau2|chr18 (48399486-48399387) | |
| 1-94, gnl|Hg17|chr19 (54535753-54535669) | |
| 1-94, gnl|Mm7|chr7 (41409266-41409347) | |
| 397-608, gnl|bosTau2|chr15 (36477412-36477623) | |
| 397-608, gnl|canFam2|chr21 (51260108-51260336) | |
| 397-608, gnl|danRer3|chr7 (22057473-22057698) | |
| 397-608, gnl|dasNov1|scaffold_4617 (11882-12110) | |
| 397-608, gnl|echTel1|scaffold_318695 (137880-137652) | |
| 397-608, gnl|fr1|chrUn (226350008-226350231) | |
| 397-608, gnl|galGal2|chr3 (44811937-44811711) | |
| 397-608, gnl|hg17|chr11 (27477476-27477704) | |
| 397-608, gnl|Hg17|chr11 (27477693-27477482) | |
| 397-608, gnl|loxAfr1|scaffold_40076 (1972-2200) | |
| 397-608, gnl|mm7|chr2 (109747240-109747012) | |
| 397-608, gnl|Mm7|chr2 (109747021-109747232) | |
| 397-608, gnl|monDom2|scaffold_10 (72905701-72905939) | |
| 397-608, gnl|oryCun1|scaffold_212415 (53267-53039) | |
| 397-608, gnl|panTro1|chr9 (27775319-27775547) | |
| 397-608, gnl|rheMac2|chr14 (44305547-44305319) | |
| 397-608, gnl|rn3|chr3 (95230912-95230684) | |
| 397-608, gnl|tetNig1|chrUn_random (102073122-102072897) | |
| 397-608, gnl|xenTro1|scaffold_4 (1312470-1312702) | |
| 826-1226, gnl|bosTau2|chr5 (7900751-7901151) | |
| 826-1226, gnl|Hg17|chr12 (79705597-79704557) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.152812) | |
| ecc (0.115035) |