Ss1.1-rcli23b_f5.5
|
GGCTGCTTGGGGTATATTGCTATCTACAGGTGTCCGGAGGCTGCACTGCGGAACGGCGGC
TCAGGCGGGCAGCCAGTGGCGACTCCAGCAGGGCTTTGCTGCCAACCCCTCTGGCTACGG
ACCTCTTACGGAGCTCCCAGACTGGTCTTACGCGGATGGCCGCCCTGCTCCTCCAATGAA
AGGCCAGCTTCGAAGAAAAGCACAAAGGGAAAAGTTTGCAAGACGAGTTGTACTGCTGTC
ACAGGAAATGGATGCTGGGTTACAGGCATGGCAGCTCAGGCAGCAGGAGAAGTTGCAGGA
AGAAGAAGGCAAGCAGAAGAATGCTCTTAAATCCAAAGGGGCTCTACTTCAGAACCCACA
ACCAAGTCAATAAAAAGCAACTCCTGTCTCCCTTCCCCAGCCTGTGTCTGGCTTTCTTTT
CCATCACCTAGACCCGGCCTCCCAGCCAGAGGAAAAACTTTATGCTCCCCATCTGTCTCC
CGGGCAAAGGAGGAAAGACACCAAGAAGAACCGTCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCTGCTTGGGGTATATTGCTATCTACAGGTGTCCGGAGGCTGCACTGCGGAACGGCGGC
TCAGGCGGGCAGCCAGTGGCGACTCCAGCAGGGCTTTGCTGCCAACCCCTCTGGCTACGG
ACCTCTTACGGAGCTCCCAGACTGGTCTTACGCGGATGGCCGCCCTGCTCCTCCAATGAA
AGGCCAGCTTCGAAGAAAAGCACAAAGGGAAAAGTTTGCAAGACGAGTTGTACTGCTGTC
ACAGGAAATGGATGCTGGGTTACAGGCATGGCAGCTCAGGCAGCAGGAGAAGTTGCAGGA
AGAAGAAGGCAAGCAGAAGAATGCTCTTAAATCCAAAGGGGCTCTACTTCAGAACCCACA
ACCAAGTCAATAAAAAGCAACTCCTGTCTCCCTTCCCCAGCCTGTGTCTGGCTTTCTTTT
CCATCACCTAGACCCGGCCTCCCAGCCAGAGGAAAAACTTTATGCTCCCCATCTGTCTCC
CGGGCAAAGGAGGAAAGACACCAAGAAGAACCGTCT
|
|
gi|31083035|ref|NP_848026.1| |
Protein identifier
|
gi|31083035|ref|NP_848026.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
214-516, gnl|bosTau2|chr10 (14170482-14170188) |
|
214-516, gnl|canFam2|chr8 (6184042-6184281) |
|
214-516, gnl|dasNov1|scaffold_15862 (797-558) |
|
214-516, gnl|echTel1|scaffold_284441 (5007-4784) |
|
214-516, gnl|hg17|chr14 (22373185-22373422) |
|
214-516, gnl|Hg17|chr14 (22373214-22373509) |
|
214-516, gnl|loxAfr1|scaffold_31766 (36564-36793) |
|
214-516, gnl|mm7|chr14 (49296571-49296803) |
|
214-516, gnl|Mm7|chr14 (49296598-49296859) |
|
214-516, gnl|monDom2|scaffold_12 (27043167-27042938) |
|
214-516, gnl|oryCun1|scaffold_207495 (139506-139733) |
|
214-516, gnl|panTro1|chr15 (21295686-21295923) |
|
214-516, gnl|rheMac2|chr7 (85646327-85646560) |
|
214-516, gnl|rn3|chr15 (32507104-32507331) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
214-516, gnl|bosTau2|chr10 (14170482-14170188) |
|
214-516, gnl|canFam2|chr8 (6184042-6184281) |
|
214-516, gnl|dasNov1|scaffold_15862 (797-558) |
|
214-516, gnl|echTel1|scaffold_284441 (5007-4784) |
|
214-516, gnl|hg17|chr14 (22373185-22373422) |
|
214-516, gnl|Hg17|chr14 (22373214-22373509) |
|
214-516, gnl|loxAfr1|scaffold_31766 (36564-36793) |
|
214-516, gnl|mm7|chr14 (49296571-49296803) |
|
214-516, gnl|Mm7|chr14 (49296598-49296859) |
|
214-516, gnl|monDom2|scaffold_12 (27043167-27042938) |
|
214-516, gnl|oryCun1|scaffold_207495 (139506-139733) |
|
214-516, gnl|panTro1|chr15 (21295686-21295923) |
|
214-516, gnl|rheMac2|chr7 (85646327-85646560) |
|
214-516, gnl|rn3|chr15 (32507104-32507331) |
|
col (0.390016) |
|
ton (0.351) |
|
ecc (0.345105) |
|
hyp (0.285673) |
|
pty (0.285429) |
|
ute (0.265569) |
|
cly (0.241284) |
|
eru (0.240096) |
|
ill (0.175593) |
|
eye (0.170503) |
|
cut (0.169924) |
|
nje (0.16592) |
|
nco (0.161734) |
|
csp (0.161186) |
|
cli (0.152812) |
|
jca (0.11396) |
|
eje (0.0988338) |
|
col (0.390016) |
|
ton (0.351) |
|
ecc (0.345105) |
|
hyp (0.285673) |
|
pty (0.285429) |
|
ute (0.265569) |
|
cly (0.241284) |
|
eru (0.240096) |
|
ill (0.175593) |
|
eye (0.170503) |
|
cut (0.169924) |
|
nje (0.16592) |
|
nco (0.161734) |
|
csp (0.161186) |
|
cli (0.152812) |
|
jca (0.11396) |
|
eje (0.0988338) |
