Non-Coding RNA Search

Ss1.1-rcli25b_b18.5

Sequence:


               
               GCCTCTGGGGGCCAGTTTTTACTGAAAATACTCAGCTTTCCCTTATAATTGGCCAGCAAG
GCCCATGAGCCACAGCCCAGGCCCTCGGTGAACACAGGGACGGACACAGCTGGCAGGAAG
GGCTGACGCCAGCCAGCCTCCAAGACATCCTGGTAGAAAAATAGACACGTCCCCCAATAA
GCCCCTCCTCGGGGGCTGGAGGGCCACTGGGAGGCCAGGTGGTTTGAGTGAGCGCCTTCC
GCTGTGAAGGGGCTCAGCCGCCATCCCTATGGGGTGAGCTGGCTGAGCTGGAGCGAGAGG
CAGTCCTTCCGAGAGCCAGGGGTCAGGGGGACCGGGGACCCCGCCCCTGGAGCCCGAGAG
GCGCAGGCCCACCCGAGCTCCCCTAGGAGAGCAGCTGCAGCACCTGGCGGGCACGCTGGG
TCTTCCCCAGCAGCGAGGCCTCCGCGCCGGCCCCCGCCTGGTCCAGCTCCCGCATCAGCG
CCTCGGCCTTCTGCACAGTCAGCTCACGGGCCCGGCCCTGGAGCCCCTCCAGGTAGGCCA
GCAGCGTGGGGAAGTGCTCCTCGGAGACCTGGTCCCTGTCGTACATGTGCACCAGCAGCC
AGGTCTGCCTCGTCTTCTGAAACCTCCAGTCCTCGCGCTTCTGGGCCCAGCCGCACAGGT
AGTCCAGGGCCAGCTCGGCCCCCGAGGGCCTGGCTGGCGGGCTCTGGGCCGCAGGGATGC
CGGCCTCGCGCAGCAGCCTGCGCGCCTCCTTCTTCCGCTCCTTCTTCAGCTTCCTGTCCA
GGACCCTCTGCTCCTCTGGGGACACAGCTCCCTGGACCTCGTCAGTGGCCGCTGGGGCTG
CGGGGGCCGGCGGCATCTCTCTCGCCGATGTCTTCAATTTTTTGCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTCTGGGGGCCAGTTTTTACTGAAAATACTCAGCTTTCCCTTATAATTGGCCAGCAAG
GCCCATGAGCCACAGCCCAGGCCCTCGGTGAACACAGGGACGGACACAGCTGGCAGGAAG
GGCTGACGCCAGCCAGCCTCCAAGACATCCTGGTAGAAAAATAGACACGTCCCCCAATAA
GCCCCTCCTCGGGGGCTGGAGGGCCACTGGGAGGCCAGGTGGTTTGAGTGAGCGCCTTCC
GCTGTGAAGGGGCTCAGCCGCCATCCCTATGGGGTGAGCTGGCTGAGCTGGAGCGAGAGG
CAGTCCTTCCGAGAGCCAGGGGTCAGGGGGACCGGGGACCCCGCCCCTGGAGCCCGAGAG
GCGCAGGCCCACCCGAGCTCCCCTAGGAGAGCAGCTGCAGCACCTGGCGGGCACGCTGGG
TCTTCCCCAGCAGCGAGGCCTCCGCGCCGGCCCCCGCCTGGTCCAGCTCCCGCATCAGCG
CCTCGGCCTTCTGCACAGTCAGCTCACGGGCCCGGCCCTGGAGCCCCTCCAGGTAGGCCA
GCAGCGTGGGGAAGTGCTCCTCGGAGACCTGGTCCCTGTCGTACATGTGCACCAGCAGCC
AGGTCTGCCTCGTCTTCTGAAACCTCCAGTCCTCGCGCTTCTGGGCCCAGCCGCACAGGT
AGTCCAGGGCCAGCTCGGCCCCCGAGGGCCTGGCTGGCGGGCTCTGGGCCGCAGGGATGC
CGGCCTCGCGCAGCAGCCTGCGCGCCTCCTTCTTCCGCTCCTTCTTCAGCTTCCTGTCCA
GGACCCTCTGCTCCTCTGGGGACACAGCTCCCTGGACCTCGTCAGTGGCCGCTGGGGCTG
CGGGGGCCGGCGGCATCTCTCTCGCCGATGTCTTCAATTTTTTGCTCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|14150149|ref|NP_115726.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|14150149|ref|NP_115726.1|

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               102-572, gnl|bosTau2|chr25 (40107212-40106750)
               

               
               102-572, gnl|Hg17|chr7 (810106-810685)
               


               
               648-803, gnl|bosTau2|chr25 (40102314-40102159)
               

               
               648-803, gnl|Hg17|chr7 (822824-822976)
               

               
               648-803, gnl|Mm7|chr9 (93779632-93779464)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               102-572, gnl|bosTau2|chr25 (40107212-40106750)
               

               
               102-572, gnl|Hg17|chr7 (810106-810685)
               


               
               648-803, gnl|bosTau2|chr25 (40102314-40102159)
               

               
               648-803, gnl|Hg17|chr7 (822824-822976)
               

               
               648-803, gnl|Mm7|chr9 (93779632-93779464)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               mcp (0.341297)
               

               
               pla (0.267344)
               

               
               ebs (0.236602)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               eru (0.120048)
               

               
               med (0.116252)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.341297)
               

               
               pla (0.267344)
               

               
               ebs (0.236602)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               eru (0.120048)
               

               
               med (0.116252)

	102-572, gnl\|bosTau2\|chr25 (40107212-40106750)
	102-572, gnl\|Hg17\|chr7 (810106-810685)

	648-803, gnl\|bosTau2\|chr25 (40102314-40102159)
	648-803, gnl\|Hg17\|chr7 (822824-822976)
	648-803, gnl\|Mm7\|chr9 (93779632-93779464)

	mcp (0.341297)
	pla (0.267344)
	ebs (0.236602)
	nep (0.183925)
	ton (0.1755)
	nje (0.16592)
	cli (0.152812)
	eru (0.120048)
	med (0.116252)