Non-Coding RNA Search

Ss1.1-rcli27b_d14.5

Sequence:


               
               TGGCTCGCTTCGCCGCCGGGCTGGGCTCGCAGGGGCGGCGGGTGGTGTTGGTCACGTCCG
GTGGCACCAAGGTCCCCCTGGAAGCCCGGCCTGTGCGCTTCCTGGACAACTTCAGCAGCG
GGCGGCGCGGGGCCACCTCCGCAGAGGCCTTTCTGGCCGCTGGCTACGGCGTCCTGTTCC
TGTACCGCGCTCGCTCTGCCTTCCCCTTTGCCCACCGCTTCCCGCCCCAGACCTGGCTGT
CGGCGTTGCGACCCTCTGGCCGAGCCCCTCCCGGCCTGCTGAGTCTGGAGGCGGAGGAGA
AGTCGCTTCCGGGCTTCGCTGCGGCTCTGCGGAGCTACCAGGAGGCTGAGGCTGCCGGCA
CCTTCTTGGCCGTAGAGTTCACCACTTTGGCCGACTATTTGCATCTGCTGCAGGCTGCAG
CCCAGGCGCTCAATCCGCTAGGCTCTTCTGCGATGTTTTACCTGGCTGCGGCCGTGTCCG
ATTTCTATGTTCCTGCCTCTGAAATGCCTGAACACAAGATCCAGTCGTCTGGGGGCCCGC
TGCAGATAACAATGAAGATGGTGCCAAAAATGCTTTCTCCTTTGGTTAAAGACTGGGCTC
CCCAAGCATTTATAATTTCCTTTAAATTGGAGACTGACCCCGCCATCGTAATTGATCGCG
CACGGAATGCTTTGGAAATTTATCGACATCAAGTGGTGGTGGCTAATATCCTTGATTCAC
GCCGGTCGTCTGTGGTTATTATAACCAAAGACTCAGAAACCGAGTTACTGTTGTCAGAAG
AAGAAGTAGAAAAGGGCATAGAGATAGAAGAGAAGCTAGTGGACGACCTTCAGTCGCGAC
ATACAGCTTTTATATGTGACAAAAATTGAAGTAAAAAGCCCGTATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCTCGCTTCGCCGCCGGGCTGGGCTCGCAGGGGCGGCGGGTGGTGTTGGTCACGTCCG
GTGGCACCAAGGTCCCCCTGGAAGCCCGGCCTGTGCGCTTCCTGGACAACTTCAGCAGCG
GGCGGCGCGGGGCCACCTCCGCAGAGGCCTTTCTGGCCGCTGGCTACGGCGTCCTGTTCC
TGTACCGCGCTCGCTCTGCCTTCCCCTTTGCCCACCGCTTCCCGCCCCAGACCTGGCTGT
CGGCGTTGCGACCCTCTGGCCGAGCCCCTCCCGGCCTGCTGAGTCTGGAGGCGGAGGAGA
AGTCGCTTCCGGGCTTCGCTGCGGCTCTGCGGAGCTACCAGGAGGCTGAGGCTGCCGGCA
CCTTCTTGGCCGTAGAGTTCACCACTTTGGCCGACTATTTGCATCTGCTGCAGGCTGCAG
CCCAGGCGCTCAATCCGCTAGGCTCTTCTGCGATGTTTTACCTGGCTGCGGCCGTGTCCG
ATTTCTATGTTCCTGCCTCTGAAATGCCTGAACACAAGATCCAGTCGTCTGGGGGCCCGC
TGCAGATAACAATGAAGATGGTGCCAAAAATGCTTTCTCCTTTGGTTAAAGACTGGGCTC
CCCAAGCATTTATAATTTCCTTTAAATTGGAGACTGACCCCGCCATCGTAATTGATCGCG
CACGGAATGCTTTGGAAATTTATCGACATCAAGTGGTGGTGGCTAATATCCTTGATTCAC
GCCGGTCGTCTGTGGTTATTATAACCAAAGACTCAGAAACCGAGTTACTGTTGTCAGAAG
AAGAAGTAGAAAAGGGCATAGAGATAGAAGAGAAGCTAGTGGACGACCTTCAGTCGCGAC
ATACAGCTTTTATATGTGACAAAAATTGAAGTAAAAAGCCCGTATTTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               PPCS_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               PPCS_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               320-439, - strand, RNAz p=0.631121
               

               
               769-888, - strand, RNAz p=0.66398

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               320-439, - strand, RNAz p=0.631121
               

               
               769-888, - strand, RNAz p=0.66398

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-442, gnl|bosTau2|chr11 (42527873-42528314)
               

               
               1-442, gnl|Hg17|chr1 (42591397-42591838)
               

               
               1-442, gnl|Mm7|chr4 (118798725-118798284)
               


               
               543-888, gnl|bosTau2|chr11 (42530562-42530907)
               

               
               543-888, gnl|Hg17|chr1 (42594364-42594705)
               

               
               543-888, gnl|Mm7|chr4 (118795735-118795395)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-442, gnl|bosTau2|chr11 (42527873-42528314)
               

               
               1-442, gnl|Hg17|chr1 (42591397-42591838)
               

               
               1-442, gnl|Mm7|chr4 (118798725-118798284)
               


               
               543-888, gnl|bosTau2|chr11 (42530562-42530907)
               

               
               543-888, gnl|Hg17|chr1 (42594364-42594705)
               

               
               543-888, gnl|Mm7|chr4 (118795735-118795395)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               amn (0.417711)
               

               
               cte (0.29274)
               

               
               cli (0.152812)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cte (0.29274)
               

               
               cli (0.152812)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	320-439, - strand, RNAz p=0.631121
	769-888, - strand, RNAz p=0.66398

	1-442, gnl\|bosTau2\|chr11 (42527873-42528314)
	1-442, gnl\|Hg17\|chr1 (42591397-42591838)
	1-442, gnl\|Mm7\|chr4 (118798725-118798284)

	543-888, gnl\|bosTau2\|chr11 (42530562-42530907)
	543-888, gnl\|Hg17\|chr1 (42594364-42594705)
	543-888, gnl\|Mm7\|chr4 (118795735-118795395)

	amn (0.417711)
	cte (0.29274)
	cli (0.152812)
	ssp (0.13552)
	ste (0.135208)
	nmm (0.132802)
	cbl (0.114797)
	cty (0.10408)