Non-Coding RNA Search

Ss1.1-rcli27b_n3.5

Sequence:


               
               CTCCTCCTCGGGGCCCTGCAGGACCTCCTTGGAATGCAGGGAAGGACCACAGCTCACAAG
GATCCCAGTGCCATCTTCCTGAACTTCCAACAACTGCTCCGAGGAAAGGTGCGTTTCCTG
CTCCTTGTAGTGGGGCCCTCCCTCTGTGCCAAGAGGGCCCCACCCGCCATAGCTGTCCCG
AGCAGCACCTCTCCATTCCACACACTGAACAAGCTCCCAAACAGGACCTCTGGATTGTTG
GAGACAAACTCCAGTATCTCAGCCAGAACTACTGGCTCTGGATTTCTCAAGAGGCTGCAG
GCATTCAGAGCCAAGATTCCTGGTCTGCTGAACCAAACCTCCAGGTCCCTAGACCAAATC
CCTGGACACCAGAATGGGACACACGGACCCTTGAGTGGAATTCATGGACTCTTTCCTGGA
CCCCAACCCGGGGCCCTCGGAGCTCCAGACATTCCTCCAGCAACTTCAGGCATGGGCTCC
CGGCCAACCTACCTCCAGCCTGGAGAGTCTCCTTCCCCAGCTCACCCTTCTCCTGGACGA
TACACTCTCTTCTCTCCTTCACCCACCTCGCCCTCCCCCACAGTCCAGCTCCAGCCTCTG
CTTCCTGACCCCTCTGCGATCACACCCAACTCTACCAGTCCTCTTCTATTGGCAGCTCAC
CCTCATTTCCAGAACCTGTCTCAGGAAGAGTAAGGTGCTCAGACCCTGCCAACTTCAGCA
TCGCCTCCCACGTACAATCTCCTTACTTGGAGGAGAGGCCCTGGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTCCTCGGGGCCCTGCAGGACCTCCTTGGAATGCAGGGAAGGACCACAGCTCACAAG
GATCCCAGTGCCATCTTCCTGAACTTCCAACAACTGCTCCGAGGAAAGGTGCGTTTCCTG
CTCCTTGTAGTGGGGCCCTCCCTCTGTGCCAAGAGGGCCCCACCCGCCATAGCTGTCCCG
AGCAGCACCTCTCCATTCCACACACTGAACAAGCTCCCAAACAGGACCTCTGGATTGTTG
GAGACAAACTCCAGTATCTCAGCCAGAACTACTGGCTCTGGATTTCTCAAGAGGCTGCAG
GCATTCAGAGCCAAGATTCCTGGTCTGCTGAACCAAACCTCCAGGTCCCTAGACCAAATC
CCTGGACACCAGAATGGGACACACGGACCCTTGAGTGGAATTCATGGACTCTTTCCTGGA
CCCCAACCCGGGGCCCTCGGAGCTCCAGACATTCCTCCAGCAACTTCAGGCATGGGCTCC
CGGCCAACCTACCTCCAGCCTGGAGAGTCTCCTTCCCCAGCTCACCCTTCTCCTGGACGA
TACACTCTCTTCTCTCCTTCACCCACCTCGCCCTCCCCCACAGTCCAGCTCCAGCCTCTG
CTTCCTGACCCCTCTGCGATCACACCCAACTCTACCAGTCCTCTTCTATTGGCAGCTCAC
CCTCATTTCCAGAACCTGTCTCAGGAAGAGTAAGGTGCTCAGACCCTGCCAACTTCAGCA
TCGCCTCCCACGTACAATCTCCTTACTTGGAGGAGAGGCCCTGGGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61887549|ref|XP_581912.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61887549|ref|XP_581912.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               76-352, - strand, RNAz p=0.991595
               

               
               393-552, - strand, RNAz p=0.770008

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               76-352, - strand, RNAz p=0.991595
               

               
               393-552, - strand, RNAz p=0.770008

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               37-766, gnl|bosTau2|chr1 (52140913-52141635)
               

               
               37-766, gnl|Hg17|chr3 (185573659-185572933)
               

               
               37-766, gnl|Mm7|chr16 (20276130-20275445)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-766, gnl|bosTau2|chr1 (52140913-52141635)
               

               
               37-766, gnl|Hg17|chr3 (185573659-185572933)
               

               
               37-766, gnl|Mm7|chr16 (20276130-20275445)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cli (0.152812)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)
               

               
               ecc (0.115035)

	76-352, - strand, RNAz p=0.991595
	393-552, - strand, RNAz p=0.770008

	37-766, gnl\|bosTau2\|chr1 (52140913-52141635)
	37-766, gnl\|Hg17\|chr3 (185573659-185572933)
	37-766, gnl\|Mm7\|chr16 (20276130-20275445)