Non-Coding RNA Search

Ss1.1-rcli34b_j12.5

Sequence:


               
               CTGGACCAGTGAATCCGCGTTGCTCTCTGCTTGGTCTCACCTGCCTCCACTCATGGACCC
CAACTGCTCCTGCCCCACAGGTGGCTCCTGCAGCTGTGCAGGGTCCTGCACGTGCAAAGC
CTGCAGATGCACCTCCTGCAAGAAGAGCTGCTGCTCCTGCTGCCCCACGGGCTGTGCCAA
GTGTGCCCAGGGCTGCATCTGCAAAGGAGCCTCGGACAAGTGCAGCTGCTGTGCCTGATG
TCAGGGAGACCCTGTCCCAGAAATTAATAGAGCAACATAGACAAACCTGCATTTTATTAT
TTTTTAATACAAGCTGACCTCATGCTACATCCCTTTTTCTATGAAATATGTGAGTTGTAA
TAAAAGTTGTCGATTTCAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGACCAGTGAATCCGCGTTGCTCTCTGCTTGGTCTCACCTGCCTCCACTCATGGACCC
CAACTGCTCCTGCCCCACAGGTGGCTCCTGCAGCTGTGCAGGGTCCTGCACGTGCAAAGC
CTGCAGATGCACCTCCTGCAAGAAGAGCTGCTGCTCCTGCTGCCCCACGGGCTGTGCCAA
GTGTGCCCAGGGCTGCATCTGCAAAGGAGCCTCGGACAAGTGCAGCTGCTGTGCCTGATG
TCAGGGAGACCCTGTCCCAGAAATTAATAGAGCAACATAGACAAACCTGCATTTTATTAT
TTTTTAATACAAGCTGACCTCATGCTACATCCCTTTTTCTATGAAATATGTGAGTTGTAA
TAAAAGTTGTCGATTTCAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               MT1E_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               MT1E_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               75-194, - strand, RNAz p=0.506048
               

               
               92-208, - strand, RNAz p=0.884541

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-194, - strand, RNAz p=0.506048
               

               
               92-208, - strand, RNAz p=0.884541

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               3-392, gnl|bosTau2|chr8 (5530393-5530002)
               

               
               3-392, gnl|Hg17|chr1 (16313255-16312864)
               

               
               3-392, gnl|Mm7|chr12 (5586909-5587250)
               


               
               53-385, gnl|bosTau2|chr10 (21392986-21392654)
               

               
               53-385, gnl|canFam2|chr12 (49320631-49320350)
               

               
               53-385, gnl|dasNov1|scaffold_45545 (4105-4335)
               

               
               53-385, gnl|echTel1|scaffold_277080 (37857-38090)
               

               
               53-385, gnl|Hg17|chr1 (16313199-16312871)
               

               
               53-385, gnl|hg17|chr9 (1237108-1237301)
               

               
               53-385, gnl|loxAfr1|scaffold_197749 (729-499)
               

               
               53-385, gnl|mm7|chr12 (5587220-5587000)
               

               
               53-385, gnl|Mm7|chr12 (5586922-5587243)
               

               
               53-385, gnl|oryCun1|scaffold_109111 (7872-7662)
               

               
               53-385, gnl|panTro1|chr2 (10029591-10029821)
               

               
               53-385, gnl|rheMac2|chr15 (75974843-75974651)
               

               
               53-385, gnl|rn3|chrX (55341880-55342104)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-392, gnl|bosTau2|chr8 (5530393-5530002)
               

               
               3-392, gnl|Hg17|chr1 (16313255-16312864)
               

               
               3-392, gnl|Mm7|chr12 (5586909-5587250)
               


               
               53-385, gnl|bosTau2|chr10 (21392986-21392654)
               

               
               53-385, gnl|canFam2|chr12 (49320631-49320350)
               

               
               53-385, gnl|dasNov1|scaffold_45545 (4105-4335)
               

               
               53-385, gnl|echTel1|scaffold_277080 (37857-38090)
               

               
               53-385, gnl|Hg17|chr1 (16313199-16312871)
               

               
               53-385, gnl|hg17|chr9 (1237108-1237301)
               

               
               53-385, gnl|loxAfr1|scaffold_197749 (729-499)
               

               
               53-385, gnl|mm7|chr12 (5587220-5587000)
               

               
               53-385, gnl|Mm7|chr12 (5586922-5587243)
               

               
               53-385, gnl|oryCun1|scaffold_109111 (7872-7662)
               

               
               53-385, gnl|panTro1|chr2 (10029591-10029821)
               

               
               53-385, gnl|rheMac2|chr15 (75974843-75974651)
               

               
               53-385, gnl|rn3|chrX (55341880-55342104)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cli (3.97311)
               

               
               cki (0.165235)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (3.97311)
               

               
               cki (0.165235)

	75-194, - strand, RNAz p=0.506048
	92-208, - strand, RNAz p=0.884541

	3-392, gnl\|bosTau2\|chr8 (5530393-5530002)
	3-392, gnl\|Hg17\|chr1 (16313255-16312864)
	3-392, gnl\|Mm7\|chr12 (5586909-5587250)

	53-385, gnl\|bosTau2\|chr10 (21392986-21392654)
	53-385, gnl\|canFam2\|chr12 (49320631-49320350)
	53-385, gnl\|dasNov1\|scaffold_45545 (4105-4335)
	53-385, gnl\|echTel1\|scaffold_277080 (37857-38090)
	53-385, gnl\|Hg17\|chr1 (16313199-16312871)
	53-385, gnl\|hg17\|chr9 (1237108-1237301)
	53-385, gnl\|loxAfr1\|scaffold_197749 (729-499)
	53-385, gnl\|mm7\|chr12 (5587220-5587000)
	53-385, gnl\|Mm7\|chr12 (5586922-5587243)
	53-385, gnl\|oryCun1\|scaffold_109111 (7872-7662)
	53-385, gnl\|panTro1\|chr2 (10029591-10029821)
	53-385, gnl\|rheMac2\|chr15 (75974843-75974651)
	53-385, gnl\|rn3\|chrX (55341880-55342104)