Non-Coding RNA Search

Ss1.1-rcli34b_m12.5

Sequence:


               
               AGTCATGCATCTGGCGTGCAAATTTCCTCTCCAGCTTCACTCCCAAGAATCATGGGTGGA
TGCTGCCCACTCACAATGGCAAGGCCCTCTTCCTTTTGACGTGCAGAATCTCGGTGGCAT
CTGGGTTCACGTCCCCCCTCTGATTATCACCAGTCTCCACAGCCTCCGGCCCCCCNTGCA
GAAACCAAACACACCCTCCTGAGTTAAGACGAAGCTCCGGCCCTGCTCCTACAGGACAAG
CTGTCTCCGATGGATGTTCACCTGTTCACCTTCCCCTTCCTTTTGCCCTCCTCCACCCTC
CCCAAGAAAAAGGCTCCTCAAGGCAAGAAAGAGAAAGAAGACAAGCCCATCTCTCGTTTA
GACGTGGTGTCTTTCTTCTGAACAAAGTACGGTTCAAAACCCAGACTGCTGTAGCCAGCA
AGTCCCTGACCCCTTCCGCGAATGTAACGAGCAGGCGGTCAGCACAGCCTGGGCTGCCTC
GGCCCGGATTGATGTCACCCCAGCATGTCTGTCTCCGAAGAACTAATGGCTGCGACTTCA
GAAAAACCCTGCAGGAAGTTTAACCCGGGTGTCATCCGCCTGGTCATCTCAGGCCCAGGA
AATTAGGCGCCTTGCCTGAGCTGCCTTTCACACATCTTTAGAGCCAGCTGACCTTTGGCC
AAAAATAAAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCATGCATCTGGCGTGCAAATTTCCTCTCCAGCTTCACTCCCAAGAATCATGGGTGGA
TGCTGCCCACTCACAATGGCAAGGCCCTCTTCCTTTTGACGTGCAGAATCTCGGTGGCAT
CTGGGTTCACGTCCCCCCTCTGATTATCACCAGTCTCCACAGCCTCCGGCCCCCCNTGCA
GAAACCAAACACACCCTCCTGAGTTAAGACGAAGCTCCGGCCCTGCTCCTACAGGACAAG
CTGTCTCCGATGGATGTTCACCTGTTCACCTTCCCCTTCCTTTTGCCCTCCTCCACCCTC
CCCAAGAAAAAGGCTCCTCAAGGCAAGAAAGAGAAAGAAGACAAGCCCATCTCTCGTTTA
GACGTGGTGTCTTTCTTCTGAACAAAGTACGGTTCAAAACCCAGACTGCTGTAGCCAGCA
AGTCCCTGACCCCTTCCGCGAATGTAACGAGCAGGCGGTCAGCACAGCCTGGGCTGCCTC
GGCCCGGATTGATGTCACCCCAGCATGTCTGTCTCCGAAGAACTAATGGCTGCGACTTCA
GAAAAACCCTGCAGGAAGTTTAACCCGGGTGTCATCCGCCTGGTCATCTCAGGCCCAGGA
AATTAGGCGCCTTGCCTGAGCTGCCTTTCACACATCTTTAGAGCCAGCTGACCTTTGGCC
AAAAATAAAGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               256-408, - strand, RNAz p=0.999999

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               256-408, - strand, RNAz p=0.999999

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               272-408, BB888049 Sugano cDNA library, adult liver Macaca fascicularis cDNA 
(dbj|BB888049.1|), blast E-value=5e-32, identity=88.32% 
               

               
               256-408, DB808367 full-length enriched swine cDNA library, adult liver Sus 
(dbj|DB808367.1|), blast E-value=0, identity=100% 
               

               
               256-408, DB808668 full-length enriched swine cDNA library, adult liver Sus 
(dbj|DB808668.1|), blast E-value=0, identity=100% 
               

               
               286-408, LIB3187-002-P1-K1-B9 LIB3187 Canis familiaris cDNA clone 
(gb|DN335195.1|), blast E-value=8e-31, identity=89.43% 
               

               
               286-408, JHU066F03L780 Canine cardiovascular system biased cDNA Canis 
(gb|DR104518.1|), blast E-value=8e-31, identity=89.43% 
               

               
               275-408, Hw_liver_16_050713_H10 Bos taurus CF-24-HW liver cDNA library Bos 
(gb|DV784280.1|), blast E-value=8e-28, identity=87.31%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               272-408, BB888049 Sugano cDNA library, adult liver Macaca fascicularis cDNA 
(dbj|BB888049.1|), blast E-value=5e-32, identity=88.32% 
               

               
               256-408, DB808367 full-length enriched swine cDNA library, adult liver Sus 
(dbj|DB808367.1|), blast E-value=0, identity=100% 
               

               
               256-408, DB808668 full-length enriched swine cDNA library, adult liver Sus 
(dbj|DB808668.1|), blast E-value=0, identity=100% 
               

               
               286-408, LIB3187-002-P1-K1-B9 LIB3187 Canis familiaris cDNA clone 
(gb|DN335195.1|), blast E-value=8e-31, identity=89.43% 
               

               
               286-408, JHU066F03L780 Canine cardiovascular system biased cDNA Canis 
(gb|DR104518.1|), blast E-value=8e-31, identity=89.43% 
               

               
               275-408, Hw_liver_16_050713_H10 Bos taurus CF-24-HW liver cDNA library Bos 
(gb|DV784280.1|), blast E-value=8e-28, identity=87.31%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-672, gnl|bosTau2|chr26 (22968919-22968272)
               

               
               1-672, gnl|Hg17|chr10 (115338664-115339341)
               

               
               1-672, gnl|Mm7|chr19 (56235115-56235787)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-672, gnl|bosTau2|chr26 (22968919-22968272)
               

               
               1-672, gnl|Hg17|chr10 (115338664-115339341)
               

               
               1-672, gnl|Mm7|chr19 (56235115-56235787)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cli (0.305623)
               

               
               fli (0.202881)
               

               
               cki (0.165235)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.305623)
               

               
               fli (0.202881)
               

               
               cki (0.165235)

	272-408, BB888049 Sugano cDNA library, adult liver Macaca fascicularis cDNA (dbj\|BB888049.1\|), blast E-value=5e-32, identity=88.32%
	256-408, DB808367 full-length enriched swine cDNA library, adult liver Sus (dbj\|DB808367.1\|), blast E-value=0, identity=100%
	256-408, DB808668 full-length enriched swine cDNA library, adult liver Sus (dbj\|DB808668.1\|), blast E-value=0, identity=100%
	286-408, LIB3187-002-P1-K1-B9 LIB3187 Canis familiaris cDNA clone (gb\|DN335195.1\|), blast E-value=8e-31, identity=89.43%
	286-408, JHU066F03L780 Canine cardiovascular system biased cDNA Canis (gb\|DR104518.1\|), blast E-value=8e-31, identity=89.43%
	275-408, Hw_liver_16_050713_H10 Bos taurus CF-24-HW liver cDNA library Bos (gb\|DV784280.1\|), blast E-value=8e-28, identity=87.31%

	1-672, gnl\|bosTau2\|chr26 (22968919-22968272)
	1-672, gnl\|Hg17\|chr10 (115338664-115339341)
	1-672, gnl\|Mm7\|chr19 (56235115-56235787)