Non-Coding RNA Search

Ss1.1-rcli35b_b16.5

Sequence:


               
               GTTAGATGATGAGCACCTCTTCCCTGCCTCATCCTCCCCCCAACACACACTTCCTCTACC
AAGCCTGTGTGGCAGGTGAGGAGAGATGCAGCAGATGGATTGAGAAGAAGGCCTATCAAA
CCCGTCACTTCTACTTGAGACATCTGGCCTGGATGACCCTTCAAACTTTCTTATTGGTCC
CACCCCCTGGGAAAGGCCATGGTGCCAATTTGAAAGGTGCTAGCTACCTGAAGCCTTGAT
ATTTCTTATGGCTGCCCCACATTCTGTCCCCCCAGGCCAGATCAGAATCTGAATTCTCTC
CTTCACCACCACCACTGCCCACCTTGGGCTCTTACCTTTAAGAGTTATGTTCCCTTTCAC
TTATTTTTGTTTCTCTCTCCTTGCACTTTGTCAAGAGTCCTCCAATTTCTACTCACAAAT
GGTCATCCAAAGTATTTCACCCAGAGATCATTTGGCATCTTCCTGCTCTCAGTAACTCCT
TTGCCCTAATAACCACCAACATAATAGAAGCCAGGGGTCCCTCATTTCTCTTTAATCTCA
CTCCTAGTGAGACCTTTAGAGACTGGTTTTCTTAGTGCCACACCTCCCTTCCCTAGAGAC
TTGTTTTCAGTCCTTCCCCACTATTGCAAAGTGGGTAAAGTATCATGGGTAGGAGGTAGT
TTCCTGCTTCTATCTTAGAATGTTTCTCCCTCCCAGACTTATCCATAATTTTTTCGTTCT
ATATTTTTTTGTACAGTATGTCAGTCTTTCACCTGTTGTCTCTGTCTCTCTCTCTCTCTC
TCACACACACACACACACACACAGTTTTAAAGGATGATGTTCTTAAACTAAAGGGACCCC
TGGCCCCTACTTTCCCATCTACTATTTTAAGGACTGGGTTTGAGTGGTTAAAATATGTCT
TGGTAGGGATGGGAGAATGGGCTTCCATTTTCCCAGGACAATGGACCGAACCAGCTGGAA
TTTTTGATGTATTGGTCCGTAGCCAAATTGGAAGAAACTTTCTGGAGACTGCACAAGACC
GGAAACCTGATGGGAGGATTGGAGGACACAGGGGAATAAAAATACAGATGCAATTAACAT
TTGATACAGTGGACTCTTGTGAATATTAACAGCGAACATTCACTGTTGCACTGTACGAAG
TCTTTCAAGTGTAATTAAACGTTTTTATTGAGTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAGATGATGAGCACCTCTTCCCTGCCTCATCCTCCCCCCAACACACACTTCCTCTACC
AAGCCTGTGTGGCAGGTGAGGAGAGATGCAGCAGATGGATTGAGAAGAAGGCCTATCAAA
CCCGTCACTTCTACTTGAGACATCTGGCCTGGATGACCCTTCAAACTTTCTTATTGGTCC
CACCCCCTGGGAAAGGCCATGGTGCCAATTTGAAAGGTGCTAGCTACCTGAAGCCTTGAT
ATTTCTTATGGCTGCCCCACATTCTGTCCCCCCAGGCCAGATCAGAATCTGAATTCTCTC
CTTCACCACCACCACTGCCCACCTTGGGCTCTTACCTTTAAGAGTTATGTTCCCTTTCAC
TTATTTTTGTTTCTCTCTCCTTGCACTTTGTCAAGAGTCCTCCAATTTCTACTCACAAAT
GGTCATCCAAAGTATTTCACCCAGAGATCATTTGGCATCTTCCTGCTCTCAGTAACTCCT
TTGCCCTAATAACCACCAACATAATAGAAGCCAGGGGTCCCTCATTTCTCTTTAATCTCA
CTCCTAGTGAGACCTTTAGAGACTGGTTTTCTTAGTGCCACACCTCCCTTCCCTAGAGAC
TTGTTTTCAGTCCTTCCCCACTATTGCAAAGTGGGTAAAGTATCATGGGTAGGAGGTAGT
TTCCTGCTTCTATCTTAGAATGTTTCTCCCTCCCAGACTTATCCATAATTTTTTCGTTCT
ATATTTTTTTGTACAGTATGTCAGTCTTTCACCTGTTGTCTCTGTCTCTCTCTCTCTCTC
TCACACACACACACACACACACAGTTTTAAAGGATGATGTTCTTAAACTAAAGGGACCCC
TGGCCCCTACTTTCCCATCTACTATTTTAAGGACTGGGTTTGAGTGGTTAAAATATGTCT
TGGTAGGGATGGGAGAATGGGCTTCCATTTTCCCAGGACAATGGACCGAACCAGCTGGAA
TTTTTGATGTATTGGTCCGTAGCCAAATTGGAAGAAACTTTCTGGAGACTGCACAAGACC
GGAAACCTGATGGGAGGATTGGAGGACACAGGGGAATAAAAATACAGATGCAATTAACAT
TTGATACAGTGGACTCTTGTGAATATTAACAGCGAACATTCACTGTTGCACTGTACGAAG
TCTTTCAAGTGTAATTAAACGTTTTTATTGAGTCCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               461-682, - strand, RNAz p=0.941747
               

               
               839-995, + strand, RNAz p=0.999999

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               461-682, - strand, RNAz p=0.941747
               

               
               839-995, + strand, RNAz p=0.999999

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB007915, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB007915, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-1176, gnl|bosTau2|chr3 (10424551-10423381)
               

               
               3-1176, gnl|Hg17|chr1 (152994577-152995657)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1176, gnl|bosTau2|chr3 (10424551-10423381)
               

               
               3-1176, gnl|Hg17|chr1 (152994577-152995657)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fhi (0.339155)
               

               
               lun (0.300978)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               lun (0.300978)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)

	461-682, - strand, RNAz p=0.941747
	839-995, + strand, RNAz p=0.999999

	3-1176, gnl\|bosTau2\|chr3 (10424551-10423381)
	3-1176, gnl\|Hg17\|chr1 (152994577-152995657)

	fhi (0.339155)
	lun (0.300978)
	fce (0.271592)
	cbe (0.239234)
	cli (0.152812)
	hyp (0.142837)