Ss1.1-rcli35b_g17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCAGGCCTATCTGAAGGACACCTACGAGCGGCTGAGGCGAGATGCTGGGGCCGCAGACA GGGCTGGCCTGGCCTTTGGAGTGAAGCTGGTACGAGGGGCATATCTGGACAAGGAGAGAG AGCTGGCCCGGCTCCAGGGGACTGAAGACCCCACTCAGCCTGACTATGAGGCTACCAATC AGAGTTACAGCCGCTGCCTGGAGCTGATGCTGAACCATGTGGCCCATCGTGGCCCCACGT GCCACCTCATGGTGGCGTCCCACAATGAGGAATCGGTCCGCCAGGCAACCAAGCGCATGT GGGAGCTGGACATCCCTCTGGATGGGCCCATCTGTTTTGGACAACTTCTGGGGATGTGTG ACCATGTCTCCTTGGCATTAGGGCAGGCTGGCTATGCTGTGTACAAGTCCATCCCCTATG GCTCCCTGGAGGAGGTCATCCCCTATCTGATCCGGAGGGCCCAGGAGAACCGAAGTGTAC TGCGGGGTGCCCGCAGGGAACGGGAGCTGCTCAGCCAAGAACTTCGGCGGAGGCTGCTGG GGCGGGGCCTGAGGGTACCCCATTAGCATCCCTAGGGGTCATGTGGTCAATAAAGGTCTT GAGCTGCTGCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCAGGCCTATCTGAAGGACACCTACGAGCGGCTGAGGCGAGATGCTGGGGCCGCAGACA GGGCTGGCCTGGCCTTTGGAGTGAAGCTGGTACGAGGGGCATATCTGGACAAGGAGAGAG AGCTGGCCCGGCTCCAGGGGACTGAAGACCCCACTCAGCCTGACTATGAGGCTACCAATC AGAGTTACAGCCGCTGCCTGGAGCTGATGCTGAACCATGTGGCCCATCGTGGCCCCACGT GCCACCTCATGGTGGCGTCCCACAATGAGGAATCGGTCCGCCAGGCAACCAAGCGCATGT GGGAGCTGGACATCCCTCTGGATGGGCCCATCTGTTTTGGACAACTTCTGGGGATGTGTG ACCATGTCTCCTTGGCATTAGGGCAGGCTGGCTATGCTGTGTACAAGTCCATCCCCTATG GCTCCCTGGAGGAGGTCATCCCCTATCTGATCCGGAGGGCCCAGGAGAACCGAAGTGTAC TGCGGGGTGCCCGCAGGGAACGGGAGCTGCTCAGCCAAGAACTTCGGCGGAGGCTGCTGG GGCGGGGCCTGAGGGTACCCCATTAGCATCCCTAGGGGTCATGTGGTCAATAAAGGTCTT GAGCTGCTGCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 508-612, + strand, RNAz p=0.9259 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 508-612, + strand, RNAz p=0.9259 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 16-184, gnl|bosTau2|chr18 (36983923-36983755) | |
| 16-184, gnl|Hg17|chr19 (40989340-40989172) | |
| 16-184, gnl|Mm7|chr7 (27447832-27448000) | |
| 380-612, gnl|bosTau2|chr18 (36944818-36944583) | |
| 380-612, gnl|canFam2|chr26 (32105901-32106082) | |
| 380-612, gnl|danRer3|chr21 (2376319-2376492) | |
| 380-612, gnl|dasNov1|scaffold_52370 (5440-5254) | |
| 380-612, gnl|echTel1|scaffold_289503 (14869-14706) | |
| 380-612, gnl|fr1|chrUn (66552386-66552542) | |
| 380-612, gnl|Hg17|chr19 (40982966-40982732) | |
| 380-612, gnl|hg17|chr22 (17275277-17275460) | |
| 380-612, gnl|loxAfr1|scaffold_37324 (11476-11661) | |
| 380-612, gnl|mm7|chr16 (17621944-17622127) | |
| 380-612, gnl|Mm7|chr7 (27454031-27454265) | |
| 380-612, gnl|monDom2|scaffold_363 (15796-15611) | |
| 380-612, gnl|oryCun1|scaffold_154923 (3812-3626) | |
| 380-612, gnl|panTro1|chr23 (17195652-17195835) | |
| 380-612, gnl|rheMac2|chr10 (64386199-64386034) | |
| 380-612, gnl|rn3|chr11 (84962435-84962249) | |
| 380-612, gnl|tetNig1|chr4 (1838486-1838642) | |
| 380-612, gnl|xenTro1|scaffold_9 (3890276-3890456) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 16-184, gnl|bosTau2|chr18 (36983923-36983755) | |
| 16-184, gnl|Hg17|chr19 (40989340-40989172) | |
| 16-184, gnl|Mm7|chr7 (27447832-27448000) | |
| 380-612, gnl|bosTau2|chr18 (36944818-36944583) | |
| 380-612, gnl|canFam2|chr26 (32105901-32106082) | |
| 380-612, gnl|danRer3|chr21 (2376319-2376492) | |
| 380-612, gnl|dasNov1|scaffold_52370 (5440-5254) | |
| 380-612, gnl|echTel1|scaffold_289503 (14869-14706) | |
| 380-612, gnl|fr1|chrUn (66552386-66552542) | |
| 380-612, gnl|Hg17|chr19 (40982966-40982732) | |
| 380-612, gnl|hg17|chr22 (17275277-17275460) | |
| 380-612, gnl|loxAfr1|scaffold_37324 (11476-11661) | |
| 380-612, gnl|mm7|chr16 (17621944-17622127) | |
| 380-612, gnl|Mm7|chr7 (27454031-27454265) | |
| 380-612, gnl|monDom2|scaffold_363 (15796-15611) | |
| 380-612, gnl|oryCun1|scaffold_154923 (3812-3626) | |
| 380-612, gnl|panTro1|chr23 (17195652-17195835) | |
| 380-612, gnl|rheMac2|chr10 (64386199-64386034) | |
| 380-612, gnl|rn3|chr11 (84962435-84962249) | |
| 380-612, gnl|tetNig1|chr4 (1838486-1838642) | |
| 380-612, gnl|xenTro1|scaffold_9 (3890276-3890456) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.458435) | |
| cki (0.330469) |