Non-Coding RNA Search

Ss1.1-rcli40b_i19.5

Sequence:


               
               GGCTTTGGAGAGGGGCCTCCAGGCTGTTGAAGTCCTAATTTCCATTTATCTCCCTACTCC
TCTCAGCTTCTGGGGGGGTGTTAACAGTATTATCTCCATTTTCAGTCTCCCTCCAAGCTC
TGTCCTGAGTTGTTTGCTTGGTAGGAGTCTGGCCCCGACCCTGTCCAGAGGAATCCTTCC
TTCTTCCCCTTTACCTCCTTGGATTCCTCTCCTCTGTTCAGAAAAGGGTCAAGGGGAGCA
AGGGAGAGATGAGCCATGTCCCTAAGCCTATCTTTTTACACGAAAAAATGAATATAAGCC
CTTCTGTACATACATGGACAGGTGTGTGCTGTCACCCTAATGTCATTTGCCAGAGAGGGG
ACATCTTTTCGGCAACATCTCATCTCTTAACTTTTTTGCTATTGCCTTTCCCCCCTACTC
TTGGTTTTGTTCTATTCTGCACTTCTATTTTGTGTTGAACTTGCTTTTTTTCATATTGAA
AAGATGACTGCCCCAAGAGCCAAAAATAAATGGGAATTGAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTTGGAGAGGGGCCTCCAGGCTGTTGAAGTCCTAATTTCCATTTATCTCCCTACTCC
TCTCAGCTTCTGGGGGGGTGTTAACAGTATTATCTCCATTTTCAGTCTCCCTCCAAGCTC
TGTCCTGAGTTGTTTGCTTGGTAGGAGTCTGGCCCCGACCCTGTCCAGAGGAATCCTTCC
TTCTTCCCCTTTACCTCCTTGGATTCCTCTCCTCTGTTCAGAAAAGGGTCAAGGGGAGCA
AGGGAGAGATGAGCCATGTCCCTAAGCCTATCTTTTTACACGAAAAAATGAATATAAGCC
CTTCTGTACATACATGGACAGGTGTGTGCTGTCACCCTAATGTCATTTGCCAGAGAGGGG
ACATCTTTTCGGCAACATCTCATCTCTTAACTTTTTTGCTATTGCCTTTCCCCCCTACTC
TTGGTTTTGTTCTATTCTGCACTTCTATTTTGTGTTGAACTTGCTTTTTTTCATATTGAA
AAGATGACTGCCCCAAGAGCCAAAAATAAATGGGAATTGAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               4-119, + strand, RNAz p=0.924088

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-119, + strand, RNAz p=0.924088

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_178014, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_178014, +

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               4-200, gnl|bosTau2|chr12 (27339580-27339383)
               

               
               4-200, gnl|Hg17|chr6 (30800609-30800792)
               


               
               292-540, gnl|bosTau2|chr12 (27339239-27338981)
               

               
               292-540, gnl|Hg17|chr6 (30800930-30801178)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-200, gnl|bosTau2|chr12 (27339580-27339383)
               

               
               4-200, gnl|Hg17|chr6 (30800609-30800792)
               


               
               292-540, gnl|bosTau2|chr12 (27339239-27338981)
               

               
               292-540, gnl|Hg17|chr6 (30800930-30801178)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cli (0.305623)
               

               
               clu (0.239292)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.305623)
               

               
               clu (0.239292)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

	4-200, gnl\|bosTau2\|chr12 (27339580-27339383)
	4-200, gnl\|Hg17\|chr6 (30800609-30800792)

	292-540, gnl\|bosTau2\|chr12 (27339239-27338981)
	292-540, gnl\|Hg17\|chr6 (30800930-30801178)