Non-Coding RNA Search

Ss1.1-rcli40b_j10.5

Sequence:


               
               GCCTCCTACTGGACCAGTGAATCCGCGTTGCTCTCTGCTTGGTCTCACCTGCCTCCACTC
ATGGACCCCAACTGCTCCTGCCCCACAGGTGGCTCCTGCAGCTGCGCAGGCTCCTGCACG
TGCAAAGCCTGCAGATGCACCTCCTGCAAGAAGAGCTGCTGCTCCTGCTGCCCCGCGGGC
TGTGCCAGGTGTGCCCAGGGCTGCATCTGCAAAGGGGCCTCGGACAAGTGCAGCTGCTGT
GCCTGAAGTCTGGGGAGACCCTGCCCCAGATGTAAATAGAGCAACTTGGACAAACTTGTA
TTTTGCTATTTTTCACACGCGCTGACTTCATGCTACATCCCTTTTTCTGTGAAATATGTG
AGTTGTAATAAAAGTTGTCAATTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTCCTACTGGACCAGTGAATCCGCGTTGCTCTCTGCTTGGTCTCACCTGCCTCCACTC
ATGGACCCCAACTGCTCCTGCCCCACAGGTGGCTCCTGCAGCTGCGCAGGCTCCTGCACG
TGCAAAGCCTGCAGATGCACCTCCTGCAAGAAGAGCTGCTGCTCCTGCTGCCCCGCGGGC
TGTGCCAGGTGTGCCCAGGGCTGCATCTGCAAAGGGGCCTCGGACAAGTGCAGCTGCTGT
GCCTGAAGTCTGGGGAGACCCTGCCCCAGATGTAAATAGAGCAACTTGGACAAACTTGTA
TTTTGCTATTTTTCACACGCGCTGACTTCATGCTACATCCCTTTTTCTGTGAAATATGTG
AGTTGTAATAAAAGTTGTCAATTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               MT1A_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               MT1A_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               112-230, + strand, RNAz p=0.73249

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               112-230, + strand, RNAz p=0.73249

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-400, gnl|bosTau2|chr8 (5530403-5530002)
               

               
               1-400, gnl|Hg17|chr1 (16313265-16312864)
               

               
               1-400, gnl|Mm7|chr12 (5586909-5587250)
               


               
               2-393, gnl|bosTau2|chr10 (21393053-21392654)
               

               
               2-393, gnl|Hg17|chr1 (16313264-16312871)
               

               
               2-393, gnl|Mm7|chr12 (5586908-5587243)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-400, gnl|bosTau2|chr8 (5530403-5530002)
               

               
               1-400, gnl|Hg17|chr1 (16313265-16312864)
               

               
               1-400, gnl|Mm7|chr12 (5586909-5587250)
               


               
               2-393, gnl|bosTau2|chr10 (21393053-21392654)
               

               
               2-393, gnl|Hg17|chr1 (16313264-16312871)
               

               
               2-393, gnl|Mm7|chr12 (5586908-5587243)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               cli (18.1846)
               

               
               fli (5.47778)
               

               
               eli (3.1881)
               

               
               elu (0.385356)
               

               
               nje (0.33184)
               

               
               cki (0.330469)
               

               
               cga (0.279096)
               

               
               cbr (0.255951)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cov (0.132153)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (18.1846)
               

               
               fli (5.47778)
               

               
               eli (3.1881)
               

               
               elu (0.385356)
               

               
               nje (0.33184)
               

               
               cki (0.330469)
               

               
               cga (0.279096)
               

               
               cbr (0.255951)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cov (0.132153)

	1-400, gnl\|bosTau2\|chr8 (5530403-5530002)
	1-400, gnl\|Hg17\|chr1 (16313265-16312864)
	1-400, gnl\|Mm7\|chr12 (5586909-5587250)

	2-393, gnl\|bosTau2\|chr10 (21393053-21392654)
	2-393, gnl\|Hg17\|chr1 (16313264-16312871)
	2-393, gnl\|Mm7\|chr12 (5586908-5587243)

	cli (18.1846)
	fli (5.47778)
	eli (3.1881)
	elu (0.385356)
	nje (0.33184)
	cki (0.330469)
	cga (0.279096)
	cbr (0.255951)
	nms (0.213858)
	nep (0.183925)
	ton (0.1755)
	cag (0.151194)
	ski (0.146735)
	hyp (0.142837)
	ute (0.132784)
	cov (0.132153)