Non-Coding RNA Search

Ss1.1-rcly06b_f14.5

Sequence:


               
               GGAAGAGGAGGAGGAAGAGGAGGATGACGAAGAAGAGGAGGAGGAGGAGGACAGCCAGGC
TGAAGTGCTGAAGGGCAGCAGGGGGGCCGCTGGACAAAAGACAACTTGTGGCCAAGGTCT
GGAGGGTCCCTGGGAGCGCCCACCCCCTCTGGATGAGCCCCAGAGAGTTGGAAGCTCTGA
GAACCAAGTGGAAGACCCCGCATTAAGTGAGCCAGGGGAAGAGCCACAGCGCCCTGCCCA
CCCTGAGCCTGGCACATAGGTACCAAGCCCTGCATCTCCCAGATGGAAGTGGAGAGGGCA
TTGCTGTTCCTCAGAAACCCACCCCATCCCTACCCTATTTTGTACCTTTCTCAATTGCTA
GGGCTGCGGCTTCTAGAAGACTAAGGCTGGTCTGTGTTTGCTTATCTGCCCACCTTTGGC
TGATGCTCAGAGTCCCTGGGCACTTGCTGCCTGATGCCTACCCCTGCCAGTCATTCCCCC
ATTCACTGGGTGGGAGCTGGGGTGTGAGAGTCTGCATTGGAAAACTCAGTAAATGGGGGA
CAAAGGTTCATCCTTCACAATTCTACTCCCCAGACCCTCTCCCCTGGGCATAGGAAACCC
ACAGGGCAGGACCCTAAGATCTGGGGAAAGAGGGTACTGAGAACTTGTAAGTGCCCACAG
ATCCTTCTCCATCCCCTGGGAATTCCTTCTCACTGGCGTCTACCAGGGCCCAGGATTCAG
GCATCCTTTCCACAGCCTCCACATTTTGGAAATCTTCCCCTTATCACCTGCTCCCCAGCC
TGGGTGCCTGGAAGATGGACTGGCAGAGGCTGCTTTGTTGCCTTTTGTTTGTGCTTTGAT
GCCAGGAATGCCGCCTAGTGTAAGTCCTTGGGAGGAGGGGCAAACAGTGGGGGATCTAGG
CTCTCCTTGTCCTCCAGCTGCTCTGTCCTCTTCCCTTCTTCCCTGACTCCAGGCCTGAAC
CGCTCCCCTGCTGTAATAAATCTTTGTAAATACCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGAGGAGGAGGAAGAGGAGGATGACGAAGAAGAGGAGGAGGAGGAGGACAGCCAGGC
TGAAGTGCTGAAGGGCAGCAGGGGGGCCGCTGGACAAAAGACAACTTGTGGCCAAGGTCT
GGAGGGTCCCTGGGAGCGCCCACCCCCTCTGGATGAGCCCCAGAGAGTTGGAAGCTCTGA
GAACCAAGTGGAAGACCCCGCATTAAGTGAGCCAGGGGAAGAGCCACAGCGCCCTGCCCA
CCCTGAGCCTGGCACATAGGTACCAAGCCCTGCATCTCCCAGATGGAAGTGGAGAGGGCA
TTGCTGTTCCTCAGAAACCCACCCCATCCCTACCCTATTTTGTACCTTTCTCAATTGCTA
GGGCTGCGGCTTCTAGAAGACTAAGGCTGGTCTGTGTTTGCTTATCTGCCCACCTTTGGC
TGATGCTCAGAGTCCCTGGGCACTTGCTGCCTGATGCCTACCCCTGCCAGTCATTCCCCC
ATTCACTGGGTGGGAGCTGGGGTGTGAGAGTCTGCATTGGAAAACTCAGTAAATGGGGGA
CAAAGGTTCATCCTTCACAATTCTACTCCCCAGACCCTCTCCCCTGGGCATAGGAAACCC
ACAGGGCAGGACCCTAAGATCTGGGGAAAGAGGGTACTGAGAACTTGTAAGTGCCCACAG
ATCCTTCTCCATCCCCTGGGAATTCCTTCTCACTGGCGTCTACCAGGGCCCAGGATTCAG
GCATCCTTTCCACAGCCTCCACATTTTGGAAATCTTCCCCTTATCACCTGCTCCCCAGCC
TGGGTGCCTGGAAGATGGACTGGCAGAGGCTGCTTTGTTGCCTTTTGTTTGTGCTTTGAT
GCCAGGAATGCCGCCTAGTGTAAGTCCTTGGGAGGAGGGGCAAACAGTGGGGGATCTAGG
CTCTCCTTGTCCTCCAGCTGCTCTGTCCTCTTCCCTTCTTCCCTGACTCCAGGCCTGAAC
CGCTCCCCTGCTGTAATAAATCTTTGTAAATACCAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q547W0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q547W0_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               476-689, - strand, RNAz p=0.940355
               

               
               849-961, + strand, RNAz p=0.93055

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               476-689, - strand, RNAz p=0.940355
               

               
               849-961, + strand, RNAz p=0.93055

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_181505, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_181505, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               209-961, gnl|bosTau2|chr19 (32284430-32285204)
               

               
               209-961, gnl|Hg17|chr17 (35045594-35046381)
               

               
               209-961, gnl|Mm7|chr11 (98466071-98466811)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               209-961, gnl|bosTau2|chr19 (32284430-32285204)
               

               
               209-961, gnl|Hg17|chr17 (35045594-35046381)
               

               
               209-961, gnl|Mm7|chr11 (98466071-98466811)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               col (0.780031)
               

               
               nco (0.323468)
               

               
               cly (0.241284)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nmm (0.132802)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.780031)
               

               
               nco (0.323468)
               

               
               cly (0.241284)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nmm (0.132802)

	476-689, - strand, RNAz p=0.940355
	849-961, + strand, RNAz p=0.93055

	209-961, gnl\|bosTau2\|chr19 (32284430-32285204)
	209-961, gnl\|Hg17\|chr17 (35045594-35046381)
	209-961, gnl\|Mm7\|chr11 (98466071-98466811)

	col (0.780031)
	nco (0.323468)
	cly (0.241284)
	fbs (0.175346)
	eye (0.170503)
	nmm (0.132802)