Non-Coding RNA Search

Ss1.1-rcly11b_l20.5

Sequence:


               
               CTCCCTGGTGGGGGCTGTTCATGGCGGTTCCGGGGTCTCCAACATTTTTCCCGGTTGTGG
TTCTAATCTGTCCCAAGCGGAGGCGGCGGAGCTTGAGGTTCTTGCTGGTGTGAAATGACT
GAGTACAAACTGGTGGTGGTTGGAGCAGGTGGTGTTGGGAAAAGCGCACTGACAATCCAG
CTAATCCAGAACCACTTTGTAGATGAATATGATCCCACCATAGAGGACTCTTACCGAAAA
CAGGTGGTTATAGATGGTGAAACCTGCCTGTTGGACATACTGGATACAGCTGGACAAGAG
GAGTACAGTGCCATGAGAGACCAATACATGAGGACAGGCGAAGGCTTCCTTTGTGTATTT
GCCATCAATAATAGCAAATCATTTGCAGATATTAACCTCTACAGGGAACAGATTAAGCGT
GTAAAAGACTCAGATGATGTACCTATGGTGCTAGTAGGAAACAAGTGTGATTTGCCAACA
AGGACTGTTGACACGAAACAAGCCCATGAACTGGCCAAGAGTTATGGGATTCCATTCATT
GAAACCTCAGCCAAAACCAGACAGGGTGTTGAAGATGCCTTTTACACACTGGTAAGAGAA
ATACGTCAGTACCGAATGAAAAAACTCAACAGCAGTGATGATGGGACTCAAGGTTGTATG
GGGTTGCCATGTGTGGTGATGTAACAAGATACTTTTAAAATTCTAGCATCAGAAAAGAGC
CACTGTCAAGCTGCACTGACACCCTGGTCCTGACTTCCCTGGAGGAGAAGTATTCCTGTT
GCTATCTTCAGTCTCACAAAGAAGCTCCTGCTACTTTCCCAACTCTCAGTAGATCAGTAT
AATATTCTCTATTTGAGAAGTTCTCAGAATAACTACCTCCTCACTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCTGGTGGGGGCTGTTCATGGCGGTTCCGGGGTCTCCAACATTTTTCCCGGTTGTGG
TTCTAATCTGTCCCAAGCGGAGGCGGCGGAGCTTGAGGTTCTTGCTGGTGTGAAATGACT
GAGTACAAACTGGTGGTGGTTGGAGCAGGTGGTGTTGGGAAAAGCGCACTGACAATCCAG
CTAATCCAGAACCACTTTGTAGATGAATATGATCCCACCATAGAGGACTCTTACCGAAAA
CAGGTGGTTATAGATGGTGAAACCTGCCTGTTGGACATACTGGATACAGCTGGACAAGAG
GAGTACAGTGCCATGAGAGACCAATACATGAGGACAGGCGAAGGCTTCCTTTGTGTATTT
GCCATCAATAATAGCAAATCATTTGCAGATATTAACCTCTACAGGGAACAGATTAAGCGT
GTAAAAGACTCAGATGATGTACCTATGGTGCTAGTAGGAAACAAGTGTGATTTGCCAACA
AGGACTGTTGACACGAAACAAGCCCATGAACTGGCCAAGAGTTATGGGATTCCATTCATT
GAAACCTCAGCCAAAACCAGACAGGGTGTTGAAGATGCCTTTTACACACTGGTAAGAGAA
ATACGTCAGTACCGAATGAAAAAACTCAACAGCAGTGATGATGGGACTCAAGGTTGTATG
GGGTTGCCATGTGTGGTGATGTAACAAGATACTTTTAAAATTCTAGCATCAGAAAAGAGC
CACTGTCAAGCTGCACTGACACCCTGGTCCTGACTTCCCTGGAGGAGAAGTATTCCTGTT
GCTATCTTCAGTCTCACAAAGAAGCTCCTGCTACTTTCCCAACTCTCAGTAGATCAGTAT
AATATTCTCTATTTGAGAAGTTCTCAGAATAACTACCTCCTCACTTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5U091_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5U091_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               115-602, gnl|bosTau2|chr17 (30975127-30975624)
               

               
               115-602, gnl|Hg17|chr5 (75505764-75505271)
               

               
               115-602, gnl|Mm7|chr10 (117336021-117328806)
               


               
               729-888, gnl|bosTau2|chr3 (26370212-26370372)
               

               
               729-888, gnl|Hg17|chr1 (114962715-114962556)
               

               
               729-888, gnl|Mm7|chr3 (102858339-102858496)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               115-602, gnl|bosTau2|chr17 (30975127-30975624)
               

               
               115-602, gnl|Hg17|chr5 (75505764-75505271)
               

               
               115-602, gnl|Mm7|chr10 (117336021-117328806)
               


               
               729-888, gnl|bosTau2|chr3 (26370212-26370372)
               

               
               729-888, gnl|Hg17|chr1 (114962715-114962556)
               

               
               729-888, gnl|Mm7|chr3 (102858339-102858496)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cly (0.120642)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)
               

               
               clu (0.119646)

	115-602, gnl\|bosTau2\|chr17 (30975127-30975624)
	115-602, gnl\|Hg17\|chr5 (75505764-75505271)
	115-602, gnl\|Mm7\|chr10 (117336021-117328806)

	729-888, gnl\|bosTau2\|chr3 (26370212-26370372)
	729-888, gnl\|Hg17\|chr1 (114962715-114962556)
	729-888, gnl\|Mm7\|chr3 (102858339-102858496)