Non-Coding RNA Search

Ss1.1-rcly13b_m8.5

Sequence:


               
               CCACGCTGGTCTAGAACCCCTGACCTTCACCAACATGTTTCCCAGCTGGGAGCACAGAGA
AGACATCGCAGAAATCACGGAAATGGACACAGAAGTTTCTAACCAGATCACCCTGGTGGA
GGATGTCCTGGCCAAGCTCTGTAAGACCATCTACCCCCTGGCTGACCTTCTGGCCAGGCC
ACTGCCCGAGGGGGTTGATCCTCTGAAGCTGGAGATTTATCTCACGGATGAAGACTTTGA
GTTTGCACTAGACATGACCCGAGAGGAATACAATGCACTGCCCGCCTGGAAGCAGGTGAA
CCTGAAGAAAGCAAAAGGTCTGTTCTGAGTGACGAGAGATGCTGGCGGAACCCCATGGTC
ACGTTCCGTCCCACTGGGCCAGGATGTTTTGCAGAGCTGGGGAGGGAGGGGTTAGTCTTT
TAAAAAAATATTTTTTTTTTTTTCGTCCACATCTTCAAAATATGAAGTGACCAGCTCTCC
TGCTTGTTTGGGAGTTGTGTATTTTGTAAATGTTTCTGAGAACTCTTTGGATCCACTGTT
TTCCACGATTCATCAGGCGATGTTCCTACGGTACCCGAGTCCCTCTGTGCACTTAAGCAG
CAGGTCCTTGGCTGTGGCCGTGACCCTGCCCTCCTGCTCCAGGGAAGCGTTGCCTCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACGCTGGTCTAGAACCCCTGACCTTCACCAACATGTTTCCCAGCTGGGAGCACAGAGA
AGACATCGCAGAAATCACGGAAATGGACACAGAAGTTTCTAACCAGATCACCCTGGTGGA
GGATGTCCTGGCCAAGCTCTGTAAGACCATCTACCCCCTGGCTGACCTTCTGGCCAGGCC
ACTGCCCGAGGGGGTTGATCCTCTGAAGCTGGAGATTTATCTCACGGATGAAGACTTTGA
GTTTGCACTAGACATGACCCGAGAGGAATACAATGCACTGCCCGCCTGGAAGCAGGTGAA
CCTGAAGAAAGCAAAAGGTCTGTTCTGAGTGACGAGAGATGCTGGCGGAACCCCATGGTC
ACGTTCCGTCCCACTGGGCCAGGATGTTTTGCAGAGCTGGGGAGGGAGGGGTTAGTCTTT
TAAAAAAATATTTTTTTTTTTTTCGTCCACATCTTCAAAATATGAAGTGACCAGCTCTCC
TGCTTGTTTGGGAGTTGTGTATTTTGTAAATGTTTCTGAGAACTCTTTGGATCCACTGTT
TTCCACGATTCATCAGGCGATGTTCCTACGGTACCCGAGTCCCTCTGTGCACTTAAGCAG
CAGGTCCTTGGCTGTGGCCGTGACCCTGCCCTCCTGCTCCAGGGAAGCGTTGCCTCATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62204163|gb|AAH92440.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62204163|gb|AAH92440.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               240-660, gnl|bosTau2|chr13 (21123437-21123843)
               

               
               240-660, gnl|Hg17|chr10 (29787270-29786864)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               240-660, gnl|bosTau2|chr13 (21123437-21123843)
               

               
               240-660, gnl|Hg17|chr10 (29787270-29786864)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               nms (0.213858)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ldo (0.0970026)

	240-660, gnl\|bosTau2\|chr13 (21123437-21123843)
	240-660, gnl\|Hg17\|chr10 (29787270-29786864)

	nms (0.213858)
	nco (0.161734)
	csp (0.161186)
	spl (0.143184)
	ute (0.132784)
	ese (0.126502)
	cly (0.120642)
	ldo (0.0970026)