Non-Coding RNA Search

Ss1.1-rcly14b_m18.5

Sequence:


               
               CTGTAGACCTGGACGAGATCGCTTACTTCATCTGGGCATCCTGACCCAGGTCAAGACCCA
AAAACCCCACAGCCCTAACCCCAGTATTCATGTGGGCCTTTAACCCTCCATCACAACCAT
ACCACATATCCCCAGGAAGTGGATACTGACCTAAATATGCTGGAGCCAGCTCGTGGGGGG
AAGAGGGGGCAGCGAGGGGAAGGAGAAAACGCTGAAGCAGCCTCCCACCCAATCAGCCCT
CTTTCCCTCCACACTCATTTCAGTGACAGAAACCTCTTCCCTGGGGTAGGGATAAGAGAG
CTCAGAGGAAAATTTTCAGCTCTCTTCCTGTTAAACATGGTTGGGTTTTAAAAGCATAGA
GAGAATCTTCAACCCTCCATCCTGGCCCGAGTGGCCATCTTTGTCCTTCTGAGGTGGTGA
CTTGATCCTCTTTAAGTTCCCAAAATAGCACCCTGCCACACTTAGAAAGGGCACATTCTT
GGTGTTGGAAACCAGGCCCTGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTAGACCTGGACGAGATCGCTTACTTCATCTGGGCATCCTGACCCAGGTCAAGACCCA
AAAACCCCACAGCCCTAACCCCAGTATTCATGTGGGCCTTTAACCCTCCATCACAACCAT
ACCACATATCCCCAGGAAGTGGATACTGACCTAAATATGCTGGAGCCAGCTCGTGGGGGG
AAGAGGGGGCAGCGAGGGGAAGGAGAAAACGCTGAAGCAGCCTCCCACCCAATCAGCCCT
CTTTCCCTCCACACTCATTTCAGTGACAGAAACCTCTTCCCTGGGGTAGGGATAAGAGAG
CTCAGAGGAAAATTTTCAGCTCTCTTCCTGTTAAACATGGTTGGGTTTTAAAAGCATAGA
GAGAATCTTCAACCCTCCATCCTGGCCCGAGTGGCCATCTTTGTCCTTCTGAGGTGGTGA
CTTGATCCTCTTTAAGTTCCCAAAATAGCACCCTGCCACACTTAGAAAGGGCACATTCTT
GGTGTTGGAAACCAGGCCCTGAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               25-140, - strand, RNAz p=0.625368

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               25-140, - strand, RNAz p=0.625368

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-140, gnl|bosTau2|chr8 (41151888-41151748)
               

               
               3-140, gnl|Hg17|chr9 (34360838-34360706)
               

               
               3-140, gnl|Mm7|chr4 (41635982-41635846)
               


               
               350-504, gnl|bosTau2|chr8 (41151371-41151214)
               

               
               350-504, gnl|Hg17|chr9 (34360456-34360308)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-140, gnl|bosTau2|chr8 (41151888-41151748)
               

               
               3-140, gnl|Hg17|chr9 (34360838-34360706)
               

               
               3-140, gnl|Mm7|chr4 (41635982-41635846)
               


               
               350-504, gnl|bosTau2|chr8 (41151371-41151214)
               

               
               350-504, gnl|Hg17|chr9 (34360456-34360308)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mas (0.210305)
               

               
               cly (0.120642)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               cly (0.120642)

	3-140, gnl\|bosTau2\|chr8 (41151888-41151748)
	3-140, gnl\|Hg17\|chr9 (34360838-34360706)
	3-140, gnl\|Mm7\|chr4 (41635982-41635846)

	350-504, gnl\|bosTau2\|chr8 (41151371-41151214)
	350-504, gnl\|Hg17\|chr9 (34360456-34360308)