Non-Coding RNA Search

Ss1.1-rcly14b_p7.5

Sequence:


               
               GCCATGTTTAGGGGCTTGATCTTTCACAACAGCAGGAGCAGGAACCACGCAGGTTCACGA
TGGCCTCCCTACCAGCTACCCGTCCCTCCTCAGCCACCTGACCTCCATGTACCTGAACAC
CCCTGTGTTCGCCCTGCCCGTGGCCAAGAAGCAGCCCCCAGGTCTTGCTTTGCGCTCATT
TCACCCTCTGGCATCCTCACTGCCCTGTGACTTCCACCTGCTCAACCTGCGTTCGCTCCA
GGCCAAGGATGAAAATGTGCCCGCAGCAGAAGCAGCACTCATCTTACACCGCAAGGGTTT
TGACTGTGGCCTGGAGGCCAAGAACTTGGGCTTCAACTGCACCACAAGCCAAGGCAAGGT
GGCCCTGGGGAGCCTTTTCCATGGGCTGGACGTGCTTTTCCTGCAGCCAACCTCCTTGAC
TTTGCTGTACCCTCTGGCCTCACCGTCCAACAGCACTGACATCTTTGTGGAGCCCATGGA
GATCGCCACCTTCTGCCTCCGCCTGGGCTAGGGCTTCTCGTGGCCTGAAGAGAAGCTCCA
TCCACAGAGACTGCCTCTTCCAAGAAGGTCGGGCTGGGCCAGCCGCCTCGGGTATCCCTT
CCCGATCTACCTCTCAGAACCGCGACAGACTGGGCTCTGCCCTCAATTTCTGTTTCTCGT
TGCTTCTGCATTTGGGGGCAACCCACAAGCGCAGGGTTGGGCGGCCAGGGCAGGTGCCAG
GGAGATGCAGGCGGGATGGCCTTTGGCCAGAGTGGGCGGTGCCAGCCTCTGCTTTGAGTC
GTGAGTGTCCACCTGGTCGGGCCCAGGCTCAAGCCCTCATCCTTCCCCCGAGTGGGATGG
AGGAGAAGCAAGGGAGACGTCAGGGTCACTGTGCGAGCTGGCTCTAGGGCAGACCTGTGG
CTGTGTAAGGTCCCCCTATCCTCGTGCAACAAGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCATGTTTAGGGGCTTGATCTTTCACAACAGCAGGAGCAGGAACCACGCAGGTTCACGA
TGGCCTCCCTACCAGCTACCCGTCCCTCCTCAGCCACCTGACCTCCATGTACCTGAACAC
CCCTGTGTTCGCCCTGCCCGTGGCCAAGAAGCAGCCCCCAGGTCTTGCTTTGCGCTCATT
TCACCCTCTGGCATCCTCACTGCCCTGTGACTTCCACCTGCTCAACCTGCGTTCGCTCCA
GGCCAAGGATGAAAATGTGCCCGCAGCAGAAGCAGCACTCATCTTACACCGCAAGGGTTT
TGACTGTGGCCTGGAGGCCAAGAACTTGGGCTTCAACTGCACCACAAGCCAAGGCAAGGT
GGCCCTGGGGAGCCTTTTCCATGGGCTGGACGTGCTTTTCCTGCAGCCAACCTCCTTGAC
TTTGCTGTACCCTCTGGCCTCACCGTCCAACAGCACTGACATCTTTGTGGAGCCCATGGA
GATCGCCACCTTCTGCCTCCGCCTGGGCTAGGGCTTCTCGTGGCCTGAAGAGAAGCTCCA
TCCACAGAGACTGCCTCTTCCAAGAAGGTCGGGCTGGGCCAGCCGCCTCGGGTATCCCTT
CCCGATCTACCTCTCAGAACCGCGACAGACTGGGCTCTGCCCTCAATTTCTGTTTCTCGT
TGCTTCTGCATTTGGGGGCAACCCACAAGCGCAGGGTTGGGCGGCCAGGGCAGGTGCCAG
GGAGATGCAGGCGGGATGGCCTTTGGCCAGAGTGGGCGGTGCCAGCCTCTGCTTTGAGTC
GTGAGTGTCCACCTGGTCGGGCCCAGGCTCAAGCCCTCATCCTTCCCCCGAGTGGGATGG
AGGAGAAGCAAGGGAGACGTCAGGGTCACTGTGCGAGCTGGCTCTAGGGCAGACCTGTGG
CTGTGTAAGGTCCCCCTATCCTCGTGCAACAAGCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61871114|ref|XP_585251.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61871114|ref|XP_585251.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               629-744, - strand, RNAz p=0.505717
               

               
               757-856, + strand, RNAz p=0.69715

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               629-744, - strand, RNAz p=0.505717
               

               
               757-856, + strand, RNAz p=0.69715

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006122, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006122, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               49-248, gnl|bosTau2|chr21 (12141123-12140924)
               

               
               49-248, gnl|Hg17|chr15 (89262424-89262623)
               

               
               49-248, gnl|Mm7|chr7 (76222374-76222169)
               


               
               357-856, gnl|bosTau2|chr21 (12139883-12139378)
               

               
               357-856, gnl|Hg17|chr15 (89263867-89264385)
               

               
               357-856, gnl|Mm7|chr7 (76220860-76220400)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-248, gnl|bosTau2|chr21 (12141123-12140924)
               

               
               49-248, gnl|Hg17|chr15 (89262424-89262623)
               

               
               49-248, gnl|Mm7|chr7 (76222374-76222169)
               


               
               357-856, gnl|bosTau2|chr21 (12139883-12139378)
               

               
               357-856, gnl|Hg17|chr15 (89263867-89264385)
               

               
               357-856, gnl|Mm7|chr7 (76220860-76220400)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cly (0.120642)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)
               

               
               ebs (0.118301)

	629-744, - strand, RNAz p=0.505717
	757-856, + strand, RNAz p=0.69715

	49-248, gnl\|bosTau2\|chr21 (12141123-12140924)
	49-248, gnl\|Hg17\|chr15 (89262424-89262623)
	49-248, gnl\|Mm7\|chr7 (76222374-76222169)

	357-856, gnl\|bosTau2\|chr21 (12139883-12139378)
	357-856, gnl\|Hg17\|chr15 (89263867-89264385)
	357-856, gnl\|Mm7\|chr7 (76220860-76220400)