Non-Coding RNA Search

Ss1.1-rcly15b_m2.5

Sequence:


               
               AGGAAAAACAAGAGAAGGGGTGCTGCCCAGGTCTTGAGGCCTTCTGAACAGAGCGAATTA
AAGCTGGTGTGCAGTGAATTCGAAAGGTCCACGTTGAGCAGTGACATTGCGGTCAGAAGC
TGGTGTCTCCAGGAAAACCCCAGGCAAACGTGTAAAGTAGATGCTGGCGTTGGAAGCAGC
TTACCCACCTCGCAGGGAGAGGCAGACGGCTACTACCAGAAGCCTGGGAAGCAGAACGCC
GAGAAGTCTTGCTCAGACTCCAGCTCAGACTGCGGCAGCTCCTCGGGCAGTGTGCGTGCC
AGCCGGGGCAGCTGGGGCAGCTGGAGCAGCACCAGCAGCTCCGACGGGGACAAGCGGCCT
GCAGTGGGCCCTCCGCATTTCCTACCACCCGGAGACAGTGTCGCACAAAATGACTTTCCC
TCTGAAGCTCCCATCTCCTTGAGTCTTTCTCATAGCATCTGCAATCCCACAGACGTGAGG
GGCCTCCCCCAGTACGTGGAAGCTCCGTGTCCCAGCCTTCCTGCCGGGCCTGCAGGTGCA
GAGGAAGATAAAGGTCTTTACCCCTCGGGGGACCTGTGGCCCGCGCAGCCCGTGTGTGTG
ACAAGCGGCTTCAACTGTGCCCTGGAGAACAGTGTCCTGCAGGCACCCGCCCCAGGGCAG
AGCAGTTTCATCGACTGGAATGCAGCGTGTGAAGGCCAGTTTCCCAGCGTTTACTGTCCA
TTGGAACTGAATGACTACAATGCCTTTCCAGAAGAAAACATGAACTACCCCACTCCTGCC
GAAGTTCAGACAGACTTTATTGACCACAGCTCCCAGTTGGCCTGGAACAGCCCCCCCAAC
GTGCCGACCGCCTGGGGACATGCCGGTCTCATCAGCTCTCCGCCCTACCTCACAAGCACC
CGAAGCCTGTCTCCCATGTCTGGACTTTTTGGTTCCATCTGGGCCCCGCAAAGCGACGTC
TATGAGAACTGCTGCCCCATCAACCCCGCTGCAGAACACCCGGCGCACATGGAGAACCAG
GCGGTCGTGTGCAAGGAGTACTACCCCGGGTTCAACCCGTTCCGTGCCTACATGAACCTG
GACATATGGACTAGCACAGCCAACAGGAACGCCAGCTTCCCGCTGTCCAGAGACTCGAGC
TACTGTGGGAATGTGTGAAAACAAAAATTCTGACTTTTAAACAATGTGAATAAAGAGGCT
TGTGTTTGGATTACTAGAGTAAACTGGTTGTTGAACTAGATTGACTTTGGTGGATATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAAAAACAAGAGAAGGGGTGCTGCCCAGGTCTTGAGGCCTTCTGAACAGAGCGAATTA
AAGCTGGTGTGCAGTGAATTCGAAAGGTCCACGTTGAGCAGTGACATTGCGGTCAGAAGC
TGGTGTCTCCAGGAAAACCCCAGGCAAACGTGTAAAGTAGATGCTGGCGTTGGAAGCAGC
TTACCCACCTCGCAGGGAGAGGCAGACGGCTACTACCAGAAGCCTGGGAAGCAGAACGCC
GAGAAGTCTTGCTCAGACTCCAGCTCAGACTGCGGCAGCTCCTCGGGCAGTGTGCGTGCC
AGCCGGGGCAGCTGGGGCAGCTGGAGCAGCACCAGCAGCTCCGACGGGGACAAGCGGCCT
GCAGTGGGCCCTCCGCATTTCCTACCACCCGGAGACAGTGTCGCACAAAATGACTTTCCC
TCTGAAGCTCCCATCTCCTTGAGTCTTTCTCATAGCATCTGCAATCCCACAGACGTGAGG
GGCCTCCCCCAGTACGTGGAAGCTCCGTGTCCCAGCCTTCCTGCCGGGCCTGCAGGTGCA
GAGGAAGATAAAGGTCTTTACCCCTCGGGGGACCTGTGGCCCGCGCAGCCCGTGTGTGTG
ACAAGCGGCTTCAACTGTGCCCTGGAGAACAGTGTCCTGCAGGCACCCGCCCCAGGGCAG
AGCAGTTTCATCGACTGGAATGCAGCGTGTGAAGGCCAGTTTCCCAGCGTTTACTGTCCA
TTGGAACTGAATGACTACAATGCCTTTCCAGAAGAAAACATGAACTACCCCACTCCTGCC
GAAGTTCAGACAGACTTTATTGACCACAGCTCCCAGTTGGCCTGGAACAGCCCCCCCAAC
GTGCCGACCGCCTGGGGACATGCCGGTCTCATCAGCTCTCCGCCCTACCTCACAAGCACC
CGAAGCCTGTCTCCCATGTCTGGACTTTTTGGTTCCATCTGGGCCCCGCAAAGCGACGTC
TATGAGAACTGCTGCCCCATCAACCCCGCTGCAGAACACCCGGCGCACATGGAGAACCAG
GCGGTCGTGTGCAAGGAGTACTACCCCGGGTTCAACCCGTTCCGTGCCTACATGAACCTG
GACATATGGACTAGCACAGCCAACAGGAACGCCAGCTTCCCGCTGTCCAGAGACTCGAGC
TACTGTGGGAATGTGTGAAAACAAAAATTCTGACTTTTAAACAATGTGAATAAAGAGGCT
TGTGTTTGGATTACTAGAGTAAACTGGTTGTTGAACTAGATTGACTTTGGTGGATATTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55623344|ref|XP_517491.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55623344|ref|XP_517491.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               202-392, gnl|bosTau2|chr17 (2988352-2988162)
               

               
               202-392, gnl|Hg17|chr4 (154901651-154901841)
               

               
               202-392, gnl|Mm7|chr3 (84022542-84022356)
               


               
               878-1260, gnl|bosTau2|chr17 (2975635-2975259)
               

               
               878-1260, gnl|Hg17|chr4 (154915053-154915433)
               

               
               878-1260, gnl|Mm7|chr3 (84011823-84011449)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               202-392, gnl|bosTau2|chr17 (2988352-2988162)
               

               
               202-392, gnl|Hg17|chr4 (154901651-154901841)
               

               
               202-392, gnl|Mm7|chr3 (84022542-84022356)
               


               
               878-1260, gnl|bosTau2|chr17 (2975635-2975259)
               

               
               878-1260, gnl|Hg17|chr4 (154915053-154915433)
               

               
               878-1260, gnl|Mm7|chr3 (84011823-84011449)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               col (0.390016)
               

               
               elu (0.385356)
               

               
               eli (0.303628)
               

               
               cly (0.241284)
               

               
               sto (0.179824)
               

               
               cje (0.165235)
               

               
               csk (0.140746)
               

               
               cst (0.140036)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               eli (0.303628)
               

               
               cly (0.241284)
               

               
               sto (0.179824)
               

               
               cje (0.165235)
               

               
               csk (0.140746)
               

               
               cst (0.140036)

	202-392, gnl\|bosTau2\|chr17 (2988352-2988162)
	202-392, gnl\|Hg17\|chr4 (154901651-154901841)
	202-392, gnl\|Mm7\|chr3 (84022542-84022356)

	878-1260, gnl\|bosTau2\|chr17 (2975635-2975259)
	878-1260, gnl\|Hg17\|chr4 (154915053-154915433)
	878-1260, gnl\|Mm7\|chr3 (84011823-84011449)

	col (0.390016)
	elu (0.385356)
	eli (0.303628)
	cly (0.241284)
	sto (0.179824)
	cje (0.165235)
	csk (0.140746)
	cst (0.140036)