Non-Coding RNA Search

Ss1.1-rcly16b_d17.5

Sequence:


               
               TGCAAACCTCCACAAGAGCCTCAGTGAAAGGCAGCAGGAGGACAGAGAGGAAATCTGCGT
GTTTCTGCCACCGAGAAGTCCCTTAGAGGTGCTCCCTGCCTCCCACAGCACTGAGCACGT
GCTGGGCGCCAGCAGTGCTGGAGAGGAGCGTGTGTGAGACTGCCTGGTGGCAGAGACACA
GCCACCCAAGCCTCAAGCCCTTCTCCCGACAGGCAGGATGCCCGGCGGCCAAGGAGCAGG
AACCCCTCCACCTGGTCAGTGGAGGATGTGGTCTGGTTCGTGAAAGATGCTGACCCGCAA
GCTCTGGGGCCCCACGTGGAGCTCTTCCGGAAGCATGAGATTGATGGCAATGCCCTCTTG
TTGTTGAAGAGTGACATGATCATGAAATACTTGGGCCTGAAGCTAGGACCTGCACTGAAA
CTCTGCTACCACATTGATAAACTGAAGCAAGCCAAGTTCTGAAGGTGTTTAAAAGATAGA
GGCAAGAGTCGAGACAACAGATCTCAAGATCATCTTCTGCCTTACCAACATAAGCCACCA
TCACGAAGAGTCTCTTCTGAAAAATAAAAGCCACAAAGACTTGGTCTTTTTAGAAAACTC
ATGCATCTTCAGCTTTTTAAAAACCCAACACGGCCCCCTTGAAAGGTTCCTCTGTGTTAA
TGATTTGCCAAAAAATTATCAAAAAAGACTATTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAAACCTCCACAAGAGCCTCAGTGAAAGGCAGCAGGAGGACAGAGAGGAAATCTGCGT
GTTTCTGCCACCGAGAAGTCCCTTAGAGGTGCTCCCTGCCTCCCACAGCACTGAGCACGT
GCTGGGCGCCAGCAGTGCTGGAGAGGAGCGTGTGTGAGACTGCCTGGTGGCAGAGACACA
GCCACCCAAGCCTCAAGCCCTTCTCCCGACAGGCAGGATGCCCGGCGGCCAAGGAGCAGG
AACCCCTCCACCTGGTCAGTGGAGGATGTGGTCTGGTTCGTGAAAGATGCTGACCCGCAA
GCTCTGGGGCCCCACGTGGAGCTCTTCCGGAAGCATGAGATTGATGGCAATGCCCTCTTG
TTGTTGAAGAGTGACATGATCATGAAATACTTGGGCCTGAAGCTAGGACCTGCACTGAAA
CTCTGCTACCACATTGATAAACTGAAGCAAGCCAAGTTCTGAAGGTGTTTAAAAGATAGA
GGCAAGAGTCGAGACAACAGATCTCAAGATCATCTTCTGCCTTACCAACATAAGCCACCA
TCACGAAGAGTCTCTTCTGAAAAATAAAAGCCACAAAGACTTGGTCTTTTTAGAAAACTC
ATGCATCTTCAGCTTTTTAAAAACCCAACACGGCCCCCTTGAAAGGTTCCTCTGTGTTAA
TGATTTGCCAAAAAATTATCAAAAAAGACTATTATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56208011|emb|CAI21207.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56208011|emb|CAI21207.1|

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-179, gnl|bosTau2|chr25 (25553404-25553227)
               

               
               1-179, gnl|canFam2|chr12 (67875664-67875937)
               

               
               1-179, gnl|dasNov1|scaffold_93 (222828-223066)
               

               
               1-179, gnl|echTel1|scaffold_256274 (11446-11745)
               

               
               1-179, gnl|hg17|chr6 (108159851-108160118)
               

               
               1-179, gnl|Hg17|chr6 (108160069-108159881)
               

               
               1-179, gnl|loxAfr1|scaffold_358 (43897-43613)
               

               
               1-179, gnl|mm7|chr10 (42750935-42750710)
               

               
               1-179, gnl|monDom2|scaffold_0 (113060162-113059881)
               

               
               1-179, gnl|oryCun1|scaffold_203010 (3634-3394)
               

               
               1-179, gnl|panTro1|chr5_random (2758043-2757776)
               

               
               1-179, gnl|rheMac2|chr4 (103746781-103747047)
               

               
               1-179, gnl|rn3|chr20 (46874287-46874060)
               


               
               334-696, gnl|bosTau2|chr25 (25532279-25531905)
               

               
               334-696, gnl|Hg17|chr6 (108133225-108132861)
               

               
               334-696, gnl|Mm7|chr10 (42767957-42768303)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-179, gnl|bosTau2|chr25 (25553404-25553227)
               

               
               1-179, gnl|canFam2|chr12 (67875664-67875937)
               

               
               1-179, gnl|dasNov1|scaffold_93 (222828-223066)
               

               
               1-179, gnl|echTel1|scaffold_256274 (11446-11745)
               

               
               1-179, gnl|hg17|chr6 (108159851-108160118)
               

               
               1-179, gnl|Hg17|chr6 (108160069-108159881)
               

               
               1-179, gnl|loxAfr1|scaffold_358 (43897-43613)
               

               
               1-179, gnl|mm7|chr10 (42750935-42750710)
               

               
               1-179, gnl|monDom2|scaffold_0 (113060162-113059881)
               

               
               1-179, gnl|oryCun1|scaffold_203010 (3634-3394)
               

               
               1-179, gnl|panTro1|chr5_random (2758043-2757776)
               

               
               1-179, gnl|rheMac2|chr4 (103746781-103747047)
               

               
               1-179, gnl|rn3|chr20 (46874287-46874060)
               


               
               334-696, gnl|bosTau2|chr25 (25532279-25531905)
               

               
               334-696, gnl|Hg17|chr6 (108133225-108132861)
               

               
               334-696, gnl|Mm7|chr10 (42767957-42768303)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cly (0.120642)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)
               

               
               jej (0.0989218)

	1-179, gnl\|bosTau2\|chr25 (25553404-25553227)
	1-179, gnl\|canFam2\|chr12 (67875664-67875937)
	1-179, gnl\|dasNov1\|scaffold_93 (222828-223066)
	1-179, gnl\|echTel1\|scaffold_256274 (11446-11745)
	1-179, gnl\|hg17\|chr6 (108159851-108160118)
	1-179, gnl\|Hg17\|chr6 (108160069-108159881)
	1-179, gnl\|loxAfr1\|scaffold_358 (43897-43613)
	1-179, gnl\|mm7\|chr10 (42750935-42750710)
	1-179, gnl\|monDom2\|scaffold_0 (113060162-113059881)
	1-179, gnl\|oryCun1\|scaffold_203010 (3634-3394)
	1-179, gnl\|panTro1\|chr5_random (2758043-2757776)
	1-179, gnl\|rheMac2\|chr4 (103746781-103747047)
	1-179, gnl\|rn3\|chr20 (46874287-46874060)

	334-696, gnl\|bosTau2\|chr25 (25532279-25531905)
	334-696, gnl\|Hg17\|chr6 (108133225-108132861)
	334-696, gnl\|Mm7\|chr10 (42767957-42768303)