Non-Coding RNA Search

Ss1.1-rcly17b_a6.5.5

Sequence:


               
               TGGACGTGGCTGGCTGAAGGCGGTGGAGGCAGCGAGGTTCCTGGCTCAGGCTGCAGGAAC
CTCCAGGCTCCAGCCCTGAGAAATCCCTTCCTCTCGGCTTGTTCCAGAGCCCTAGGCCTC
CACCCAGCCCCTGAGCCCCTGAGTGGGCCAGCACCACTGAGCGGGATCCCCTGTGGTCCA
AAGAGGCTGGAGGGGAAGGACGTGGGCTGGAGAGAAGACCCTCCTCCCTGGAGTGTGGGA
GTGGAGGTGACCACCATGATCCCCTGGGTGCTCTTGGCCTGCACCCTTCCTTGTGCAGCC
GACCCGCTCCTTGGTGCCTTCGCTCGCAGGGACTTCCAGAAGGGATCCCCTCAACTCATC
TGCAGCCTGCCTGGCCCTCAGGGCCCACCTGGCCCCCCAGGAGCCCCAGGGCCCTCGGGA
ATGGTGGGAAGAATGGGCTTTCCAGGCAGAGATGGCCAGGATGGCCAGGACGGGGACCGG
GGGAACAGCGGAGAGGAAGGTCCACCTGGCCGGACAGGTAACCGGGGAAAGCCAGGACCG
AAGGGCAAAGCCGGGGCCATTGGGCGGGCCGGCCCTCGTGGCCCCAAGGGGGTCAGTGGT
GCCCCAGGGAAGCACGGCACGCCAGGCAAGAAGGGGCCCAAGGGCAAGAAGGGGGAGCCA
GGCCTCCCAGGACCCTGCAGCTGTGGCAGTGGCCATGCCAAGTCGGCCTTCTCCGTGGCA
GTGACCAAGAGCTACCCTCGGGAACGGCTGCCCATCAAGTTTGACAAGATCCTGATGAAT
GAGGGTGGGCATTACAATGCGTCCAGTGGCAAGTTCGTCTGCGGCGTGCCAGGGATCTAC
TACTTCACCTACGACATCACGCTGGCCAACAAGCACCTGGCCATCGGCCTGGTGCACAAC
GGCCAGTACCGCATCCGGACCTTCGATGCCAACACGGGCAACCACGACGTGGCCTCGGGC
TCCACCATCCTGGCTCTCAAGCAGGGTGATGAGGTCTGGCTGCAGATCTTCTACTCAGAG
CAGAATGGGCTCTTCTATGACCCATACTGGACCGACAGCCTCTTCACAGGCTTCCTCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGACGTGGCTGGCTGAAGGCGGTGGAGGCAGCGAGGTTCCTGGCTCAGGCTGCAGGAAC
CTCCAGGCTCCAGCCCTGAGAAATCCCTTCCTCTCGGCTTGTTCCAGAGCCCTAGGCCTC
CACCCAGCCCCTGAGCCCCTGAGTGGGCCAGCACCACTGAGCGGGATCCCCTGTGGTCCA
AAGAGGCTGGAGGGGAAGGACGTGGGCTGGAGAGAAGACCCTCCTCCCTGGAGTGTGGGA
GTGGAGGTGACCACCATGATCCCCTGGGTGCTCTTGGCCTGCACCCTTCCTTGTGCAGCC
GACCCGCTCCTTGGTGCCTTCGCTCGCAGGGACTTCCAGAAGGGATCCCCTCAACTCATC
TGCAGCCTGCCTGGCCCTCAGGGCCCACCTGGCCCCCCAGGAGCCCCAGGGCCCTCGGGA
ATGGTGGGAAGAATGGGCTTTCCAGGCAGAGATGGCCAGGATGGCCAGGACGGGGACCGG
GGGAACAGCGGAGAGGAAGGTCCACCTGGCCGGACAGGTAACCGGGGAAAGCCAGGACCG
AAGGGCAAAGCCGGGGCCATTGGGCGGGCCGGCCCTCGTGGCCCCAAGGGGGTCAGTGGT
GCCCCAGGGAAGCACGGCACGCCAGGCAAGAAGGGGCCCAAGGGCAAGAAGGGGGAGCCA
GGCCTCCCAGGACCCTGCAGCTGTGGCAGTGGCCATGCCAAGTCGGCCTTCTCCGTGGCA
GTGACCAAGAGCTACCCTCGGGAACGGCTGCCCATCAAGTTTGACAAGATCCTGATGAAT
GAGGGTGGGCATTACAATGCGTCCAGTGGCAAGTTCGTCTGCGGCGTGCCAGGGATCTAC
TACTTCACCTACGACATCACGCTGGCCAACAAGCACCTGGCCATCGGCCTGGTGCACAAC
GGCCAGTACCGCATCCGGACCTTCGATGCCAACACGGGCAACCACGACGTGGCCTCGGGC
TCCACCATCCTGGCTCTCAAGCAGGGTGATGAGGTCTGGCTGCAGATCTTCTACTCAGAG
CAGAATGGGCTCTTCTATGACCCATACTGGACCGACAGCCTCTTCACAGGCTTCCTCATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               C1QT2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               C1QT2_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               56-160, - strand, RNAz p=0.753141
               

               
               506-625, - strand, RNAz p=0.999122

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               56-160, - strand, RNAz p=0.753141
               

               
               506-625, - strand, RNAz p=0.999122

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               37-201, gnl|bosTau2|chr7 (48867590-48867754)
               

               
               37-201, gnl|Hg17|chr5 (159717790-159717588)
               

               
               37-201, gnl|Mm7|chr11 (43440154-43440359)
               


               
               426-1005, gnl|bosTau2|chr12 (19096334-19096918)
               

               
               426-1005, gnl|Hg17|chr13 (23364102-23363518)
               

               
               426-1005, gnl|Mm7|chr14 (55647023-55647607)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-201, gnl|bosTau2|chr7 (48867590-48867754)
               

               
               37-201, gnl|Hg17|chr5 (159717790-159717588)
               

               
               37-201, gnl|Mm7|chr11 (43440154-43440359)
               


               
               426-1005, gnl|bosTau2|chr12 (19096334-19096918)
               

               
               426-1005, gnl|Hg17|chr13 (23364102-23363518)
               

               
               426-1005, gnl|Mm7|chr14 (55647023-55647607)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cga (0.279096)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               cly (0.120642)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               cly (0.120642)

	56-160, - strand, RNAz p=0.753141
	506-625, - strand, RNAz p=0.999122

	37-201, gnl\|bosTau2\|chr7 (48867590-48867754)
	37-201, gnl\|Hg17\|chr5 (159717790-159717588)
	37-201, gnl\|Mm7\|chr11 (43440154-43440359)

	426-1005, gnl\|bosTau2\|chr12 (19096334-19096918)
	426-1005, gnl\|Hg17\|chr13 (23364102-23363518)
	426-1005, gnl\|Mm7\|chr14 (55647023-55647607)

	cga (0.279096)
	csp (0.161186)
	cag (0.151194)
	nmm (0.132802)
	eep (0.122564)
	cly (0.120642)