Non-Coding RNA Search

Ss1.1-rcly18b_h19.5

Sequence:


               
               AACTTTGGCGAAGTCTTCAGTGGACGCCTGCGAGCGGATAACACCCTGGTGGCGGTGAAA
TCTTGCCGAGAAACGCTCCCACCTGACCTCAAGGCCAAGTTTCTGCAGGAAGCCAGGATC
CTGAAGCAGTACAGCCACCCCAACATCGTGCGTCTCATTGGCGTCTGCACCCAGAAGCAG
CCGATCTACATCGTCATGGAGCTCGTGCAGGGGGGCGACTTCCTGACCTTCCTTCGGACA
GAGGGAGCCCGCCTGCGGATGAAGACGCTGTTGCAGATGGTGGGGGATGCTGCAGCGGGC
ATGGAGTATCTGGAGAGCAAGTGCTGCATCCACCGGGACCTGGCTGCTCGGAACTGCCTG
GTAACAGAGAAGAATGTCCTGAAGATCAGCGACTTTGGGATGTCCCGGGAGGAAGCCGAC
GGAGTCTACGCGGCCTCCGGGGGCCTCAGACAAGTCCCTGTGAAGTGGACGGCACCAGAA
GCTCTTAACTATGGCCGCTACTCCTCCGAGAGCGACGTGTGGAGCTTTGGCATCTTGCTC
TGGGAGGCCTTCAGCCTGGGGGCCTCCCCCTACCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTTTGGCGAAGTCTTCAGTGGACGCCTGCGAGCGGATAACACCCTGGTGGCGGTGAAA
TCTTGCCGAGAAACGCTCCCACCTGACCTCAAGGCCAAGTTTCTGCAGGAAGCCAGGATC
CTGAAGCAGTACAGCCACCCCAACATCGTGCGTCTCATTGGCGTCTGCACCCAGAAGCAG
CCGATCTACATCGTCATGGAGCTCGTGCAGGGGGGCGACTTCCTGACCTTCCTTCGGACA
GAGGGAGCCCGCCTGCGGATGAAGACGCTGTTGCAGATGGTGGGGGATGCTGCAGCGGGC
ATGGAGTATCTGGAGAGCAAGTGCTGCATCCACCGGGACCTGGCTGCTCGGAACTGCCTG
GTAACAGAGAAGAATGTCCTGAAGATCAGCGACTTTGGGATGTCCCGGGAGGAAGCCGAC
GGAGTCTACGCGGCCTCCGGGGGCCTCAGACAAGTCCCTGTGAAGTGGACGGCACCAGAA
GCTCTTAACTATGGCCGCTACTCCTCCGAGAGCGACGTGTGGAGCTTTGGCATCTTGCTC
TGGGAGGCCTTCAGCCTGGGGGCCTCCCCCTACCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34857370|ref|XP_214974.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34857370|ref|XP_214974.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               359-478, + strand, RNAz p=0.555727

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               359-478, + strand, RNAz p=0.555727

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-141, gnl|bosTau2|chr21 (12167410-12167272)
               

               
               1-141, gnl|canFam2|chr3 (56209816-56209658)
               

               
               1-141, gnl|danRer3|chr7 (4418168-4418292)
               

               
               1-141, gnl|dasNov1|scaffold_41626 (1782-1942)
               

               
               1-141, gnl|echTel1|scaffold_305481 (2722-2857)
               

               
               1-141, gnl|fr1|chrUn (257590318-257590191)
               

               
               1-141, gnl|galGal2|chr10 (20658642-20658508)
               

               
               1-141, gnl|hg17|chr15 (89236933-89237093)
               

               
               1-141, gnl|Hg17|chr15 (89236944-89237082)
               

               
               1-141, gnl|loxAfr1|scaffold_71103 (13447-13607)
               

               
               1-141, gnl|mm7|chr7 (76249522-76249362)
               

               
               1-141, gnl|Mm7|chr7 (76249509-76249371)
               

               
               1-141, gnl|monDom2|scaffold_45 (9917554-9917711)
               

               
               1-141, gnl|oryCun1|scaffold_84438 (1159-1320)
               

               
               1-141, gnl|panTro1|chr16 (90188342-90188502)
               

               
               1-141, gnl|rn3|chr1 (136280986-136280826)
               

               
               1-141, gnl|tetNig1|chr5 (5078167-5078041)
               

               
               1-141, gnl|xenTro1|scaffold_358 (192151-192018)
               


               
               321-494, gnl|bosTau2|chr21 (12166391-12166217)
               

               
               321-494, gnl|Hg17|chr15 (89237872-89238046)
               

               
               321-494, gnl|Mm7|chr7 (76248136-76247962)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-141, gnl|bosTau2|chr21 (12167410-12167272)
               

               
               1-141, gnl|canFam2|chr3 (56209816-56209658)
               

               
               1-141, gnl|danRer3|chr7 (4418168-4418292)
               

               
               1-141, gnl|dasNov1|scaffold_41626 (1782-1942)
               

               
               1-141, gnl|echTel1|scaffold_305481 (2722-2857)
               

               
               1-141, gnl|fr1|chrUn (257590318-257590191)
               

               
               1-141, gnl|galGal2|chr10 (20658642-20658508)
               

               
               1-141, gnl|hg17|chr15 (89236933-89237093)
               

               
               1-141, gnl|Hg17|chr15 (89236944-89237082)
               

               
               1-141, gnl|loxAfr1|scaffold_71103 (13447-13607)
               

               
               1-141, gnl|mm7|chr7 (76249522-76249362)
               

               
               1-141, gnl|Mm7|chr7 (76249509-76249371)
               

               
               1-141, gnl|monDom2|scaffold_45 (9917554-9917711)
               

               
               1-141, gnl|oryCun1|scaffold_84438 (1159-1320)
               

               
               1-141, gnl|panTro1|chr16 (90188342-90188502)
               

               
               1-141, gnl|rn3|chr1 (136280986-136280826)
               

               
               1-141, gnl|tetNig1|chr5 (5078167-5078041)
               

               
               1-141, gnl|xenTro1|scaffold_358 (192151-192018)
               


               
               321-494, gnl|bosTau2|chr21 (12166391-12166217)
               

               
               321-494, gnl|Hg17|chr15 (89237872-89238046)
               

               
               321-494, gnl|Mm7|chr7 (76248136-76247962)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               amn (0.417711)
               

               
               duo (0.172801)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               duo (0.172801)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

	1-141, gnl\|bosTau2\|chr21 (12167410-12167272)
	1-141, gnl\|canFam2\|chr3 (56209816-56209658)
	1-141, gnl\|danRer3\|chr7 (4418168-4418292)
	1-141, gnl\|dasNov1\|scaffold_41626 (1782-1942)
	1-141, gnl\|echTel1\|scaffold_305481 (2722-2857)
	1-141, gnl\|fr1\|chrUn (257590318-257590191)
	1-141, gnl\|galGal2\|chr10 (20658642-20658508)
	1-141, gnl\|hg17\|chr15 (89236933-89237093)
	1-141, gnl\|Hg17\|chr15 (89236944-89237082)
	1-141, gnl\|loxAfr1\|scaffold_71103 (13447-13607)
	1-141, gnl\|mm7\|chr7 (76249522-76249362)
	1-141, gnl\|Mm7\|chr7 (76249509-76249371)
	1-141, gnl\|monDom2\|scaffold_45 (9917554-9917711)
	1-141, gnl\|oryCun1\|scaffold_84438 (1159-1320)
	1-141, gnl\|panTro1\|chr16 (90188342-90188502)
	1-141, gnl\|rn3\|chr1 (136280986-136280826)
	1-141, gnl\|tetNig1\|chr5 (5078167-5078041)
	1-141, gnl\|xenTro1\|scaffold_358 (192151-192018)

	321-494, gnl\|bosTau2\|chr21 (12166391-12166217)
	321-494, gnl\|Hg17\|chr15 (89237872-89238046)
	321-494, gnl\|Mm7\|chr7 (76248136-76247962)

	amn (0.417711)
	duo (0.172801)
	ese (0.126502)
	cly (0.120642)
	jca (0.11396)