Ss1.1-rcly18b_i19.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CTGTTCGGAGCCCTTCTGCAGAAAGGAACCTGCTGGATCTCCTCTCCCCACAGCCGTCTC CGGGCCCTCTGAATTATATTCCACAAAAAAGTATCCCCAAGGAAGTGCCACCAGGGACTA AGTCCTCTCCAGGTTGGTCCTGGGAGGCTGGTCCGTTGGCTTCTTCCCCATCGTCCCAGA ATACACCTCTGGCTCACGTGTTTGTCCCTTTGGAGTCTGTTAAGCCAAGCAGCCTGCCTC CTGTTATCGTGTATGACCGGAATGGATTCAGAATTCTGCTCCACTTTTCCCAGACCGGGG CCCCTGGCCACCCAGAGGTGCAGGTTCTCCTGCTGACCATGATGAGCACCGCCACCCAGC CCGTCTGGGACATCATGTTTCAAGTGGCCGTGCCCAAGTCAATGAGAGTGAAACTGCAGC CAGCATCCAGCTCCAAGCTTCCTGCTTTCAGTCCTCTGATGCCTCCAGCTGTGATCTCCC AGATGCTGCTGCTGGACAATCCACACAAAGAGCCCATCCGGTTACGGTATAAGCTGACCT TCAACCAAGGCGGACAGCCTTTCAGTGAAGTAGGAGAAGTGAAAGACTTTCCAGATCTGG CTGTCTTGGGTGCTGCCTAAGTTCTCACAGGACAGACCCTGTCATGCAAGCTTAGGCCCG CATTCCTGTTGCTGTCTAGATAGGACTAATCACAGCGATTAGTGCCAAGTGCCAAGTGTT CTATCCTGACGTCAGGTTCTGGATGCCGACCTCTGACTTATTCTGCAGATAATTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CTGTTCGGAGCCCTTCTGCAGAAAGGAACCTGCTGGATCTCCTCTCCCCACAGCCGTCTC CGGGCCCTCTGAATTATATTCCACAAAAAAGTATCCCCAAGGAAGTGCCACCAGGGACTA AGTCCTCTCCAGGTTGGTCCTGGGAGGCTGGTCCGTTGGCTTCTTCCCCATCGTCCCAGA ATACACCTCTGGCTCACGTGTTTGTCCCTTTGGAGTCTGTTAAGCCAAGCAGCCTGCCTC CTGTTATCGTGTATGACCGGAATGGATTCAGAATTCTGCTCCACTTTTCCCAGACCGGGG CCCCTGGCCACCCAGAGGTGCAGGTTCTCCTGCTGACCATGATGAGCACCGCCACCCAGC CCGTCTGGGACATCATGTTTCAAGTGGCCGTGCCCAAGTCAATGAGAGTGAAACTGCAGC CAGCATCCAGCTCCAAGCTTCCTGCTTTCAGTCCTCTGATGCCTCCAGCTGTGATCTCCC AGATGCTGCTGCTGGACAATCCACACAAAGAGCCCATCCGGTTACGGTATAAGCTGACCT TCAACCAAGGCGGACAGCCTTTCAGTGAAGTAGGAGAAGTGAAAGACTTTCCAGATCTGG CTGTCTTGGGTGCTGCCTAAGTTCTCACAGGACAGACCCTGTCATGCAAGCTTAGGCCCG CATTCCTGTTGCTGTCTAGATAGGACTAATCACAGCGATTAGTGCCAAGTGCCAAGTGTT CTATCCTGACGTCAGGTTCTGGATGCCGACCTCTGACTTATTCTGCAGATAATTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
264-383, - strand, RNAz p=0.598496 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
264-383, - strand, RNAz p=0.598496 |
Aligned organism(s): 29 entry(ies) | More info |
Aligned organism(s): 29 entry(ies) | Help | Less info |
224-398, gnl|bosTau2|chr25 (19439647-19439473) | |
224-398, gnl|canFam2|chr6 (25363486-25363276) | |
224-398, gnl|dasNov1|scaffold_3648 (50953-50777) | |
224-398, gnl|echTel1|scaffold_291305 (18480-18682) | |
224-398, gnl|galGal2|chr14 (8962273-8962094) | |
224-398, gnl|hg17|chr16 (23388814-23389020) | |
224-398, gnl|Hg17|chr16 (23388992-23388818) | |
224-398, gnl|loxAfr1|scaffold_6539 (4968-4761) | |
224-398, gnl|mm7|chr7 (117915755-117915957) | |
224-398, gnl|Mm7|chr7 (117915932-117915759) | |
224-398, gnl|monDom2|scaffold_17 (43603003-43602796) | |
224-398, gnl|oryCun1|scaffold_173701 (118955-118751) | |
224-398, gnl|panTro1|chr18 (24005992-24006198) | |
224-398, gnl|rheMac2|chr20 (21967437-21967643) | |
224-398, gnl|rn3|chr1 (180958067-180958271) | |
224-398, gnl|tetNig1|chrUn_random (127453505-127453689) | |
510-804, gnl|bosTau2|chr25 (19437424-19437129) | |
510-804, gnl|canFam2|chr6 (25365483-25365194) | |
510-804, gnl|dasNov1|scaffold_45471 (558-283) | |
510-804, gnl|echTel1|scaffold_291305 (16463-16697) | |
510-804, gnl|hg17|chr16 (23386117-23386407) | |
510-804, gnl|Hg17|chr16 (23386522-23386212) | |
510-804, gnl|loxAfr1|scaffold_6539 (6905-6659) | |
510-804, gnl|mm7|chr7 (117913698-117913953) | |
510-804, gnl|Mm7|chr7 (117914066-117913795) | |
510-804, gnl|monDom2|scaffold_17 (43608828-43608594) | |
510-804, gnl|oryCun1|scaffold_173701 (120790-120508) | |
510-804, gnl|panTro1|chr18 (24003206-24003575) | |
510-804, gnl|rn3|chr1 (180955946-180956200) |
Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
224-398, gnl|bosTau2|chr25 (19439647-19439473) | |
224-398, gnl|canFam2|chr6 (25363486-25363276) | |
224-398, gnl|dasNov1|scaffold_3648 (50953-50777) | |
224-398, gnl|echTel1|scaffold_291305 (18480-18682) | |
224-398, gnl|galGal2|chr14 (8962273-8962094) | |
224-398, gnl|hg17|chr16 (23388814-23389020) | |
224-398, gnl|Hg17|chr16 (23388992-23388818) | |
224-398, gnl|loxAfr1|scaffold_6539 (4968-4761) | |
224-398, gnl|mm7|chr7 (117915755-117915957) | |
224-398, gnl|Mm7|chr7 (117915932-117915759) | |
224-398, gnl|monDom2|scaffold_17 (43603003-43602796) | |
224-398, gnl|oryCun1|scaffold_173701 (118955-118751) | |
224-398, gnl|panTro1|chr18 (24005992-24006198) | |
224-398, gnl|rheMac2|chr20 (21967437-21967643) | |
224-398, gnl|rn3|chr1 (180958067-180958271) | |
224-398, gnl|tetNig1|chrUn_random (127453505-127453689) | |
510-804, gnl|bosTau2|chr25 (19437424-19437129) | |
510-804, gnl|canFam2|chr6 (25365483-25365194) | |
510-804, gnl|dasNov1|scaffold_45471 (558-283) | |
510-804, gnl|echTel1|scaffold_291305 (16463-16697) | |
510-804, gnl|hg17|chr16 (23386117-23386407) | |
510-804, gnl|Hg17|chr16 (23386522-23386212) | |
510-804, gnl|loxAfr1|scaffold_6539 (6905-6659) | |
510-804, gnl|mm7|chr7 (117913698-117913953) | |
510-804, gnl|Mm7|chr7 (117914066-117913795) | |
510-804, gnl|monDom2|scaffold_17 (43608828-43608594) | |
510-804, gnl|oryCun1|scaffold_173701 (120790-120508) | |
510-804, gnl|panTro1|chr18 (24003206-24003575) | |
510-804, gnl|rn3|chr1 (180955946-180956200) |
Expressed library(ies): 5 entry(ies) | More info |
Expressed library(ies): 5 entry(ies) | Help | Less info |
cly (0.241284) | |
ute (0.132784) | |
cov (0.132153) | |
ecc (0.115035) | |
cty (0.10408) |
Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cly (0.241284) | |
ute (0.132784) | |
cov (0.132153) | |
ecc (0.115035) | |
cty (0.10408) |