Non-Coding RNA Search

Ss1.1-rcly21b_f7.5

Sequence:


               
               GGGACAATTACTGCCACCCCATAGCCTTGCCTAAGCATCGGCCTACCCCTGACCCAGAAG
GGGACCGGGTTCGGGCAGAAATGCCCAATCAGCTTCGGAAGCAACTGGAGGCAATCATAG
CCACGGATCCGCTTAACCCACTCACAGCTGAAGACAAAGAACTGCTCTGGCATTTCAGAT
ATGAAAGCCTGAAGGATCCCAAAGCGTATCCTAAGCTCTTTAGCTCGGTGAAATGGGGAC
AGCAAGAAATTGTGGCCAAAACATACCAATTATTAGCCAAAAGGGAGGTCTGGGATCAGA
GTGCTTTGGATGTGGGGTTAACCATGCAGCTCCTGGACTGCAACTTCTCGGATGAAAACG
TGAGAGCCATTGCAGTCCAGAAACTGGAGAGCTTGGAGGATGATGACGTGCTCCATTACC
TGCTCCAGCTGGTCCAGGCTGTGAAATTTGAACCATACCATGACAGTGCCCTAGCCAGAT
TTCTGCTGAAGCGTGGTTTAAGAAACAAGAGAATTGGTCACTTCTTGTTTTGGTTCTTGA
GAAGTGAGATTGCCCAGTCTAGGCACTATCAGCAGAGGTTTGCAGTGATCCTGGAAGCCT
ACCTGAGGGGCTGTGGCACAGCCATGCTGCACGACTTCACCCAGCAAGTCCAAGTAATTG
ACATGTTACAAAAAGTCACCATTGACATTAAATCGCTCTCTGCTGAAAAGTATGACGTCA
GTTCCCAAGTTATTTCCCAACTTAAGCAAAAGCTTGAAAACCTACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGACAATTACTGCCACCCCATAGCCTTGCCTAAGCATCGGCCTACCCCTGACCCAGAAG
GGGACCGGGTTCGGGCAGAAATGCCCAATCAGCTTCGGAAGCAACTGGAGGCAATCATAG
CCACGGATCCGCTTAACCCACTCACAGCTGAAGACAAAGAACTGCTCTGGCATTTCAGAT
ATGAAAGCCTGAAGGATCCCAAAGCGTATCCTAAGCTCTTTAGCTCGGTGAAATGGGGAC
AGCAAGAAATTGTGGCCAAAACATACCAATTATTAGCCAAAAGGGAGGTCTGGGATCAGA
GTGCTTTGGATGTGGGGTTAACCATGCAGCTCCTGGACTGCAACTTCTCGGATGAAAACG
TGAGAGCCATTGCAGTCCAGAAACTGGAGAGCTTGGAGGATGATGACGTGCTCCATTACC
TGCTCCAGCTGGTCCAGGCTGTGAAATTTGAACCATACCATGACAGTGCCCTAGCCAGAT
TTCTGCTGAAGCGTGGTTTAAGAAACAAGAGAATTGGTCACTTCTTGTTTTGGTTCTTGA
GAAGTGAGATTGCCCAGTCTAGGCACTATCAGCAGAGGTTTGCAGTGATCCTGGAAGCCT
ACCTGAGGGGCTGTGGCACAGCCATGCTGCACGACTTCACCCAGCAAGTCCAAGTAATTG
ACATGTTACAAAAAGTCACCATTGACATTAAATCGCTCTCTGCTGAAAAGTATGACGTCA
GTTCCCAAGTTATTTCCCAACTTAAGCAAAAGCTTGAAAACCTACAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               161-438, + strand, RNAz p=0.929356

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-438, + strand, RNAz p=0.929356

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               318-411, - strand, RNAmicro p=0.966104

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               318-411, - strand, RNAmicro p=0.966104

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               2-438, gnl|bosTau2|chr4 (24490509-24490073)
               

               
               2-438, gnl|Hg17|chr7 (106103517-106103953)
               

               
               2-438, gnl|Mm7|chr12 (30044115-30043679)
               


               
               504-732, gnl|bosTau2|chr4 (24486920-24486692)
               

               
               504-732, gnl|canFam2|chr18 (16588556-16588322)
               

               
               504-732, gnl|danRer3|chrNA (121175259-121175025)
               

               
               504-732, gnl|dasNov1|scaffold_153258 (1408-1174)
               

               
               504-732, gnl|echTel1|scaffold_293107 (10280-10048)
               

               
               504-732, gnl|fr1|chrUn (261584381-261584056)
               

               
               504-732, gnl|galGal2|chr1 (9279898-9279664)
               

               
               504-732, gnl|hg17|chr7 (106107103-106107337)
               

               
               504-732, gnl|Hg17|chr7 (106107109-106107337)
               

               
               504-732, gnl|loxAfr1|scaffold_14930 (38151-38385)
               

               
               504-732, gnl|mm7|chr12 (30040420-30040187)
               

               
               504-732, gnl|Mm7|chr12 (30040413-30040185)
               

               
               504-732, gnl|monDom2|scaffold_22 (45921311-45921077)
               

               
               504-732, gnl|oryCun1|scaffold_211648 (47133-47367)
               

               
               504-732, gnl|panTro1|chr6 (108012623-108012857)
               

               
               504-732, gnl|rheMac2|chr3 (144290920-144291154)
               

               
               504-732, gnl|rn3|chr6 (50471962-50471729)
               

               
               504-732, gnl|tetNig1|chrUn_random (54762080-54762392)
               

               
               504-732, gnl|xenTro1|scaffold_452 (176759-176993)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-438, gnl|bosTau2|chr4 (24490509-24490073)
               

               
               2-438, gnl|Hg17|chr7 (106103517-106103953)
               

               
               2-438, gnl|Mm7|chr12 (30044115-30043679)
               


               
               504-732, gnl|bosTau2|chr4 (24486920-24486692)
               

               
               504-732, gnl|canFam2|chr18 (16588556-16588322)
               

               
               504-732, gnl|danRer3|chrNA (121175259-121175025)
               

               
               504-732, gnl|dasNov1|scaffold_153258 (1408-1174)
               

               
               504-732, gnl|echTel1|scaffold_293107 (10280-10048)
               

               
               504-732, gnl|fr1|chrUn (261584381-261584056)
               

               
               504-732, gnl|galGal2|chr1 (9279898-9279664)
               

               
               504-732, gnl|hg17|chr7 (106107103-106107337)
               

               
               504-732, gnl|Hg17|chr7 (106107109-106107337)
               

               
               504-732, gnl|loxAfr1|scaffold_14930 (38151-38385)
               

               
               504-732, gnl|mm7|chr12 (30040420-30040187)
               

               
               504-732, gnl|Mm7|chr12 (30040413-30040185)
               

               
               504-732, gnl|monDom2|scaffold_22 (45921311-45921077)
               

               
               504-732, gnl|oryCun1|scaffold_211648 (47133-47367)
               

               
               504-732, gnl|panTro1|chr6 (108012623-108012857)
               

               
               504-732, gnl|rheMac2|chr3 (144290920-144291154)
               

               
               504-732, gnl|rn3|chr6 (50471962-50471729)
               

               
               504-732, gnl|tetNig1|chrUn_random (54762080-54762392)
               

               
               504-732, gnl|xenTro1|scaffold_452 (176759-176993)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cly (0.120642)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)

	2-438, gnl\|bosTau2\|chr4 (24490509-24490073)
	2-438, gnl\|Hg17\|chr7 (106103517-106103953)
	2-438, gnl\|Mm7\|chr12 (30044115-30043679)

	504-732, gnl\|bosTau2\|chr4 (24486920-24486692)
	504-732, gnl\|canFam2\|chr18 (16588556-16588322)
	504-732, gnl\|danRer3\|chrNA (121175259-121175025)
	504-732, gnl\|dasNov1\|scaffold_153258 (1408-1174)
	504-732, gnl\|echTel1\|scaffold_293107 (10280-10048)
	504-732, gnl\|fr1\|chrUn (261584381-261584056)
	504-732, gnl\|galGal2\|chr1 (9279898-9279664)
	504-732, gnl\|hg17\|chr7 (106107103-106107337)
	504-732, gnl\|Hg17\|chr7 (106107109-106107337)
	504-732, gnl\|loxAfr1\|scaffold_14930 (38151-38385)
	504-732, gnl\|mm7\|chr12 (30040420-30040187)
	504-732, gnl\|Mm7\|chr12 (30040413-30040185)
	504-732, gnl\|monDom2\|scaffold_22 (45921311-45921077)
	504-732, gnl\|oryCun1\|scaffold_211648 (47133-47367)
	504-732, gnl\|panTro1\|chr6 (108012623-108012857)
	504-732, gnl\|rheMac2\|chr3 (144290920-144291154)
	504-732, gnl\|rn3\|chr6 (50471962-50471729)
	504-732, gnl\|tetNig1\|chrUn_random (54762080-54762392)
	504-732, gnl\|xenTro1\|scaffold_452 (176759-176993)