Non-Coding RNA Search

Ss1.1-rcly21b_l8.5

Sequence:


               
               CCTGACCTCTCATACGCAAGAGAGCCATGCCCTCAGAGGATGCTCACCAGTGCCTGCCTT
CCCAGGTCTGGCAGGGGGCGGAGCAGCTAGACCTTTAAATCTGTCCCTTCCCCCGCCTGC
CCGCCCTGCCAGCCTTAGGAACAGCTGTCAGGAGAGATCAGCATCAGGCCTGAGCAGCAC
CTCCCCCAGCCACACGGGCAGTCCAGGCTGGGCAGGCAGGAGAGGTCTTGCCTGGGAGTA
TAGGGAAGTTTCAGACTGGGACCAGGTACGGGAGGGCCTCCCCAGCCCTGGCCTTGGCCC
AGTCCCTGCTTTAGTCGATTGGATGTCACCAATCAGCTCTCAGCAGAGGCGGGATTGGGT
GCCGTATTAGTACCCCCTTCCAACTGGAGTAGGCCTTTTTCACTTGGTTTCTCTTAATCA
ACCACACCTATGCTGGGGGAGGGCACATTGCACCCCTTTCCCTTGGAGGAGTCCCTGTAG
GGACTTCCCAATCTTAGCTTGGGCACAATAATAAAAGATCTGCATCTACTGATAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGACCTCTCATACGCAAGAGAGCCATGCCCTCAGAGGATGCTCACCAGTGCCTGCCTT
CCCAGGTCTGGCAGGGGGCGGAGCAGCTAGACCTTTAAATCTGTCCCTTCCCCCGCCTGC
CCGCCCTGCCAGCCTTAGGAACAGCTGTCAGGAGAGATCAGCATCAGGCCTGAGCAGCAC
CTCCCCCAGCCACACGGGCAGTCCAGGCTGGGCAGGCAGGAGAGGTCTTGCCTGGGAGTA
TAGGGAAGTTTCAGACTGGGACCAGGTACGGGAGGGCCTCCCCAGCCCTGGCCTTGGCCC
AGTCCCTGCTTTAGTCGATTGGATGTCACCAATCAGCTCTCAGCAGAGGCGGGATTGGGT
GCCGTATTAGTACCCCCTTCCAACTGGAGTAGGCCTTTTTCACTTGGTTTCTCTTAATCA
ACCACACCTATGCTGGGGGAGGGCACATTGCACCCCTTTCCCTTGGAGGAGTCCCTGTAG
GGACTTCCCAATCTTAGCTTGGGCACAATAATAAAAGATCTGCATCTACTGATAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-153, - strand, RNAz p=0.791173
               

               
               231-540, - strand, RNAz p=0.999146

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-153, - strand, RNAz p=0.791173
               

               
               231-540, - strand, RNAz p=0.999146

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               249-330, - strand, RNAmicro p=0.966482
               

               
               51-204, - strand, RNAmicro p=0.959373
               

               
               214-305, + strand, RNAmicro p=0.903893

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               249-330, - strand, RNAmicro p=0.966482
               

               
               51-204, - strand, RNAmicro p=0.959373
               

               
               214-305, + strand, RNAmicro p=0.903893

Similar Transcript(s): 2 entry(ies)

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Similar Transcript(s): 2 entry(ies)

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               231-533, DB812509 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB812509.1|), blast E-value=0, identity=99.67% 
               

               
               259-533, LB02729.CR_J04 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV894151.1|), 
blast E-value=3e-23, identity=82.37%

Similar Transcript(s): 2 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               231-533, DB812509 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB812509.1|), blast E-value=0, identity=99.67% 
               

               
               259-533, LB02729.CR_J04 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV894151.1|), 
blast E-value=3e-23, identity=82.37%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-540, gnl|bosTau2|chr2 (79665782-79665248)
               

               
               1-540, gnl|Hg17|chr1 (26182397-26182896)
               

               
               1-540, gnl|Mm7|chr4 (133622261-133621776)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr2 (79665782-79665248)
               

               
               1-540, gnl|Hg17|chr1 (26182397-26182896)
               

               
               1-540, gnl|Mm7|chr4 (133622261-133621776)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cag (0.302389)
               

               
               pty (0.285429)
               

               
               mas (0.210305)
               

               
               cly (0.120642)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               pty (0.285429)
               

               
               mas (0.210305)
               

               
               cly (0.120642)

	40-153, - strand, RNAz p=0.791173
	231-540, - strand, RNAz p=0.999146

	249-330, - strand, RNAmicro p=0.966482
	51-204, - strand, RNAmicro p=0.959373
	214-305, + strand, RNAmicro p=0.903893

	231-533, DB812509 full-length enriched swine cDNA library, adult ovary Sus (dbj\|DB812509.1\|), blast E-value=0, identity=99.67%
	259-533, LB02729.CR_J04 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|DV894151.1\|), blast E-value=3e-23, identity=82.37%

	1-540, gnl\|bosTau2\|chr2 (79665782-79665248)
	1-540, gnl\|Hg17\|chr1 (26182397-26182896)
	1-540, gnl\|Mm7\|chr4 (133622261-133621776)