Non-Coding RNA Search

Ss1.1-rcly22b_p22.5

Sequence:


               
               GTTTGGATGCTATAACTCATGGCCTGGGGTAGGTTTTCATTTGTAAGGCCCTTGAATGGC
CTCCCTGGATTATGTAGACATAGCCCTGAAGGGAGGTGGGCCTCTGGGTAGAAGAGATTG
AAGGCTCAGCACCTCCTCATTGGAAGGATGATAGCTTGGGAAGCCCTTAACTAAAGTCTG
CTGTCAGGTCCCCGAGTGAAGTGGATTCTGGACCAATGACCAGGGGTTCAGCACAGGGCC
AGAAGTTGATGGACAGGATGGTTTGGGCCCCTGTGCATATGAGGCTAGTATTTCAAAGAC
CTAAGCCATGTGGCTGAGATTATCCAGGTGAACTAAAGAGGCTGTAACTTGGGAACCTTA
GCAGGGGGCACCACGTTGGCCTGAGCCAGGATGTGGCTCAGCAAAGGGATCATGTAGCAA
TGGACAGGCATTCACTGAACTGCACCAGAATGTGTTCAACAGCGACACCATGTGGCAACA
CCTGGAGTGGCCCAACCAGGCTCCTTCCTGGAGGTCACAGACTGACACTTTCAGACCAAA
AAAGCCTTCAGATATCTCAATTCATTCCAGGAGAAGGACAGTCCAAGTGGGAGAGATTGG
ATTTCTTGAAAAGCTGGGCATGTGGAAAGTTAAAGGGTTAAATGGAAAAATAAAAAGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGGATGCTATAACTCATGGCCTGGGGTAGGTTTTCATTTGTAAGGCCCTTGAATGGC
CTCCCTGGATTATGTAGACATAGCCCTGAAGGGAGGTGGGCCTCTGGGTAGAAGAGATTG
AAGGCTCAGCACCTCCTCATTGGAAGGATGATAGCTTGGGAAGCCCTTAACTAAAGTCTG
CTGTCAGGTCCCCGAGTGAAGTGGATTCTGGACCAATGACCAGGGGTTCAGCACAGGGCC
AGAAGTTGATGGACAGGATGGTTTGGGCCCCTGTGCATATGAGGCTAGTATTTCAAAGAC
CTAAGCCATGTGGCTGAGATTATCCAGGTGAACTAAAGAGGCTGTAACTTGGGAACCTTA
GCAGGGGGCACCACGTTGGCCTGAGCCAGGATGTGGCTCAGCAAAGGGATCATGTAGCAA
TGGACAGGCATTCACTGAACTGCACCAGAATGTGTTCAACAGCGACACCATGTGGCAACA
CCTGGAGTGGCCCAACCAGGCTCCTTCCTGGAGGTCACAGACTGACACTTTCAGACCAAA
AAAGCCTTCAGATATCTCAATTCATTCCAGGAGAAGGACAGTCCAAGTGGGAGAGATTGG
ATTTCTTGAAAAGCTGGGCATGTGGAAAGTTAAAGGGTTAAATGGAAAAATAAAAAGAGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               57-149, - strand, RNAz p=0.974029

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               57-149, - strand, RNAz p=0.974029

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               25-660, gnl|bosTau2|chr18 (18286996-18286395)
               

               
               25-660, gnl|Hg17|chr16 (49263762-49263066)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-660, gnl|bosTau2|chr18 (18286996-18286395)
               

               
               25-660, gnl|Hg17|chr16 (49263762-49263066)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cje (0.165235)
               

               
               cly (0.120642)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               cly (0.120642)

	25-660, gnl\|bosTau2\|chr18 (18286996-18286395)
	25-660, gnl\|Hg17\|chr16 (49263762-49263066)