Non-Coding RNA Search

Ss1.1-rcly24b_l24.5

Sequence:


               
               CAGAGCATCGTACTCTCCTCTCATGATCACGATGAAGAGTGACAGGTGGGTCTTCTTGCC
TGTCCCGTCCCCGTTCAGGTAGAGCCGCAGGCACAGCTTGTACCCATACTTAGCAGTGTA
GAAAGCTGGGGAGAAGAGGCTGACGGTTCTGCCACAGGCCGACTCATGGCACCGCCTGGT
GACGTTGGTGATCTTCCACAGGAAGGTGCCGTCGAAGGAGGCCTCCTCCAGGAGGCGGAG
GCTCTGCTCCAGCTTGCCCAGGGCCTGGTCTTTCTGGGCCAGGGTCTGCTGCAACTCTAT
CACCCTCTGTTCCAAGCTCTGGATGTGCTCTCTGTCCAGCTGGCTCTGGTGGATGGAGGC
AGCCAGGGCCAGGTTGGAGGCCTCCACCTCCTTGTTGAGGACGGCGACAATATTCTCAAA
CACGCACAGCTTCCCCTCCAGCTCTGTCAGGAGCTTCTCTTTCATGAAGTGCTGCAGGGC
CTGTTCCTCCTGGCTCTCGGAGCAGGGGGCCCGGTAGCAGTCCACCTCTAGGTCCCCAGC
CACCTCCACGGCCCCCTGCAGCTGCAGGTCTGACAGATTCTGCTCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGCATCGTACTCTCCTCTCATGATCACGATGAAGAGTGACAGGTGGGTCTTCTTGCC
TGTCCCGTCCCCGTTCAGGTAGAGCCGCAGGCACAGCTTGTACCCATACTTAGCAGTGTA
GAAAGCTGGGGAGAAGAGGCTGACGGTTCTGCCACAGGCCGACTCATGGCACCGCCTGGT
GACGTTGGTGATCTTCCACAGGAAGGTGCCGTCGAAGGAGGCCTCCTCCAGGAGGCGGAG
GCTCTGCTCCAGCTTGCCCAGGGCCTGGTCTTTCTGGGCCAGGGTCTGCTGCAACTCTAT
CACCCTCTGTTCCAAGCTCTGGATGTGCTCTCTGTCCAGCTGGCTCTGGTGGATGGAGGC
AGCCAGGGCCAGGTTGGAGGCCTCCACCTCCTTGTTGAGGACGGCGACAATATTCTCAAA
CACGCACAGCTTCCCCTCCAGCTCTGTCAGGAGCTTCTCTTTCATGAAGTGCTGCAGGGC
CTGTTCCTCCTGGCTCTCGGAGCAGGGGGCCCGGTAGCAGTCCACCTCTAGGTCCCCAGC
CACCTCCACGGCCCCCTGCAGCTGCAGGTCTGACAGATTCTGCTCCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874912|ref|XP_613776.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874912|ref|XP_613776.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               339-588, - strand, RNAz p=0.828945

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               339-588, - strand, RNAz p=0.828945

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-262, gnl|bosTau2|chr21 (47070764-47070503)
               

               
               1-262, gnl|Hg17|chr14 (102441622-102441361)
               

               
               1-262, gnl|Mm7|chr12 (108778226-108777965)
               


               
               300-588, gnl|bosTau2|chr8 (61394475-61394187)
               

               
               300-588, gnl|Hg17|chr9 (120755156-120755444)
               

               
               300-588, gnl|Mm7|chr2 (34955448-34955736)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-262, gnl|bosTau2|chr21 (47070764-47070503)
               

               
               1-262, gnl|Hg17|chr14 (102441622-102441361)
               

               
               1-262, gnl|Mm7|chr12 (108778226-108777965)
               


               
               300-588, gnl|bosTau2|chr8 (61394475-61394187)
               

               
               300-588, gnl|Hg17|chr9 (120755156-120755444)
               

               
               300-588, gnl|Mm7|chr2 (34955448-34955736)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cly (0.120642)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)

	1-262, gnl\|bosTau2\|chr21 (47070764-47070503)
	1-262, gnl\|Hg17\|chr14 (102441622-102441361)
	1-262, gnl\|Mm7\|chr12 (108778226-108777965)

	300-588, gnl\|bosTau2\|chr8 (61394475-61394187)
	300-588, gnl\|Hg17\|chr9 (120755156-120755444)
	300-588, gnl\|Mm7\|chr2 (34955448-34955736)