Non-Coding RNA Search

Ss1.1-rcly26b_i17.5.5

Sequence:


               
               CAGGAGTGTCCCCACCATGGCCTGGACGGTGCTTCTGATCGGGCTCCTCGCTGTCGGCTC
AGGGGTGGATTCTCAGACTGTGATCCAGGAGCCGGCGATGTCAGTGTCTCCTGGAGGGAC
CGTCACACTCACCTGTGCCTTTAGCTCTGGGTCAGTCACTACTAGTAACTACCCCAGCTG
GTTCCAGCAGACACCAGGCCAGCCTCCCCGACTGCTGATCTACAGAACAAACAGCCGCCC
GACTGGGGTCCCCAGTCGCTTCTCTGGAGCCATCTCTGGGAACAAAGCCGCCCTCACCAT
CACGGGGGCCCAGGCTGAGGACGAGGCCGACTACTTCTGTGCTCTGTATAAAAGTAGTGC
TAATGTTCCCTTCGGCGGTGGGACCCATCTGACCGTCCTCGGTCAGCCCAAGGCCGCTCC
CACGGTCAACCTCTTCCCGCCCTCCTCTGAGGAGCTCGGCACCAACAAGGCCACCCTGGT
GTGTCTAATAAGTGACTTCTACCCGGGCGCCGTGACGGTGACCTGGAAGGCAGGCGGCAC
CACCGTCACCCAGGGCGTGGAGACCACCAAGCCCTCGAAACAGAGCAACAACAAGTACGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAGTGTCCCCACCATGGCCTGGACGGTGCTTCTGATCGGGCTCCTCGCTGTCGGCTC
AGGGGTGGATTCTCAGACTGTGATCCAGGAGCCGGCGATGTCAGTGTCTCCTGGAGGGAC
CGTCACACTCACCTGTGCCTTTAGCTCTGGGTCAGTCACTACTAGTAACTACCCCAGCTG
GTTCCAGCAGACACCAGGCCAGCCTCCCCGACTGCTGATCTACAGAACAAACAGCCGCCC
GACTGGGGTCCCCAGTCGCTTCTCTGGAGCCATCTCTGGGAACAAAGCCGCCCTCACCAT
CACGGGGGCCCAGGCTGAGGACGAGGCCGACTACTTCTGTGCTCTGTATAAAAGTAGTGC
TAATGTTCCCTTCGGCGGTGGGACCCATCTGACCGTCCTCGGTCAGCCCAAGGCCGCTCC
CACGGTCAACCTCTTCCCGCCCTCCTCTGAGGAGCTCGGCACCAACAAGGCCACCCTGGT
GTGTCTAATAAGTGACTTCTACCCGGGCGCCGTGACGGTGACCTGGAAGGCAGGCGGCAC
CACCGTCACCCAGGGCGTGGAGACCACCAAGCCCTCGAAACAGAGCAACAACAAGTACGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2765427|emb|CAA75033.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2765427|emb|CAA75033.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               401-600, gnl|bosTau2|chr17 (41403615-41403814)
               

               
               401-600, gnl|Hg17|chr22 (21586260-21586459)
               

               
               401-600, gnl|Mm7|chr16_random (2587805-2588004)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               401-600, gnl|bosTau2|chr17 (41403615-41403814)
               

               
               401-600, gnl|Hg17|chr22 (21586260-21586459)
               

               
               401-600, gnl|Mm7|chr16_random (2587805-2588004)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cly (3.01605)
               

               
               csp (2.90135)
               

               
               cag (1.20956)
               

               
               col (0.780031)
               

               
               duo (0.691204)
               

               
               clu (0.598229)
               

               
               cga (0.558191)
               

               
               mcp (0.511945)
               

               
               ill (0.351185)
               

               
               mas (0.210305)
               

               
               lnt (0.142308)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (3.01605)
               

               
               csp (2.90135)
               

               
               cag (1.20956)
               

               
               col (0.780031)
               

               
               duo (0.691204)
               

               
               clu (0.598229)
               

               
               cga (0.558191)
               

               
               mcp (0.511945)
               

               
               ill (0.351185)
               

               
               mas (0.210305)
               

               
               lnt (0.142308)
               

               
               cty (0.10408)

	401-600, gnl\|bosTau2\|chr17 (41403615-41403814)
	401-600, gnl\|Hg17\|chr22 (21586260-21586459)
	401-600, gnl\|Mm7\|chr16_random (2587805-2588004)

	cly (3.01605)
	csp (2.90135)
	cag (1.20956)
	col (0.780031)
	duo (0.691204)
	clu (0.598229)
	cga (0.558191)
	mcp (0.511945)
	ill (0.351185)
	mas (0.210305)
	lnt (0.142308)
	cty (0.10408)